PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016589.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family BBR-BPC
Protein Properties Length: 318aa    MW: 35473.9 Da    PI: 9.8829
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016589.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3568e-10913171301
    GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                  mdd+g+re  r+k+ +y+        ++++lk   ++++m+++aerd++irern+al+ekkaa aerdmaflqrd+a++ern a++erdn+l al+++
  Aco016589.1   1 MDDNGQREssRHKAdHYKtahaqwmtNQNQLK--ENIKIMALVAERDEAIRERNIALAEKKAAQAERDMAFLQRDAAITERNTAIIERDNALSALQYA 96 
                  99***99999****999988777765446777..6789***********************************************************9 PP

    GAGA_bind  88 enslasalpvgvqvlsgtksidslqq.lsepqledsavelreeeklealpieeaaeeakekkk....kkkrqrakkpkekkak.kkkkksekskkkvk 179
                  +++ ++ +  g ++ + ++ + ++++ +++pq +d  ++ +e   +++ p  +aa++++++k+    + k q +++p +k +k k +k + ++ ++++
  Aco016589.1  97 RENGVNGNNCGPECFPPSRGAAKHHHyQQQPQYSDGYYNDHEALPMSTAPDGDAAKSSHKSKRgrndPTKVQASASPSKKPSKkKSRKVGGEHFNNKQ 194
                  99999666666666666555544444355799999988866666666555555544444444311113333333333333332133333333333333 PP

    GAGA_bind 180 kesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
                     a+   +++e+k +dl+ln+v +Dest+PvPvCsCtG+ + CYkWG GGWqSaCCttt+S+yPLPv++++r+aR++grKmS+++fkkl+++LaaeG
  Aco016589.1 195 VTVARlGAKHHEWKGQDLGLNQVVFDESTMPVPVCSCTGKYQPCYKWGDGGWQSACCTTTLSMYPLPVMPNKRHARVGGRKMSGSVFKKLISRLAAEG 292
                  33333344899*************************************************************************************** PP

    GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
                  ydls p+DLkdhWAkHGtn+++ti+
  Aco016589.1 293 YDLSMPIDLKDHWAKHGTNRYITIK 317
                  ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.2E-1301317IPR010409GAGA-binding transcriptional activator
PfamPF062173.0E-971317IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDNGQRESS RHKADHYKTA HAQWMTNQNQ LKENIKIMAL VAERDEAIRE RNIALAEKKA  60
AQAERDMAFL QRDAAITERN TAIIERDNAL SALQYARENG VNGNNCGPEC FPPSRGAAKH  120
HHYQQQPQYS DGYYNDHEAL PMSTAPDGDA AKSSHKSKRG RNDPTKVQAS ASPSKKPSKK  180
KSRKVGGEHF NNKQVTVARL GAKHHEWKGQ DLGLNQVVFD ESTMPVPVCS CTGKYQPCYK  240
WGDGGWQSAC CTTTLSMYPL PVMPNKRHAR VGGRKMSGSV FKKLISRLAA EGYDLSMPID  300
LKDHWAKHGT NRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093983.10.0barley B recombinant-like protein D
RefseqXP_020093984.10.0barley B recombinant-like protein D
SwissprotQ5VSA81e-110BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A199UIX20.0A0A199UIX2_ANACO; Barley B recombinant-like protein D
STRINGXP_008779916.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-105basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]