PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco016428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 168aa MW: 19006.4 Da PI: 4.2657 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 70.4 | 3.2e-22 | 30 | 104 | 11 | 85 |
NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 a + +i+k++lP + ++++da++++ ec +efi +v+se++d c+re++kti+++ +l al +lGf +y+e++ + Aco016428.1 30 ATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLVSSESNDVCNREDKKTIAPEHVLKALEDLGFGEYIEEVYA 104 67889******************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.4E-35 | 10 | 152 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.12E-32 | 30 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-18 | 30 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence Send to blast |
MEPMEIVGKS KEDVSLPKDE THNFCYYFSA TMFKIIKEML PPDVRVARDA QDLLVECCVE 60 FINLVSSESN DVCNREDKKT IAPEHVLKAL EDLGFGEYIE EVYAAYEQHK MDTLDSPKGG 120 KFVGIEMTEE EALAEQQRMF AEARARMNNG LNPQKQSDSD PDRSLES* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 4e-33 | 30 | 144 | 19 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020097205.1 | 1e-108 | protein Dr1 homolog | ||||
Swissprot | P49592 | 5e-77 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A199ULN4 | 1e-107 | A0A199ULN4_ANACO; Protein Dr | ||||
STRING | XP_008787932.1 | 3e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23090.4 | 5e-81 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco016428.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|