PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco016401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9048.99 Da PI: 6.5295 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 4 | 49 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ +l+ +a + + ++ +W +ar + g++++++k ++ + Aco016401.1 4 SWTAKQNKLFERALAVYDKDtpdRWQNVARAVE-GKSAEEVKRHYEM 49 7********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.125 | 1 | 55 | IPR017884 | SANT domain |
SMART | SM00717 | 4.4E-7 | 1 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-6 | 4 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 4 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.4E-13 | 4 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-6 | 4 | 50 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MASSWTAKQN KLFERALAVY DKDTPDRWQN VARAVEGKSA EEVKRHYEML VEDLKHIEAG 60 QTVYSNYKSS GGGGATEEQR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-36 | 4 | 80 | 10 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020097992.1 | 1e-53 | transcription factor RADIALIS-like | ||||
Swissprot | Q58FS3 | 7e-36 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A199VYC0 | 2e-52 | A0A199VYC0_ANACO; Transcription factor RADIALIS | ||||
STRING | XP_008782489.1 | 1e-39 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 7e-33 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Aco016401.1 |
Publications ? help Back to Top | |||
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