PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016398.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 423aa    MW: 47716.4 Da    PI: 7.1918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016398.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.3e-10202249455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Aco016398.1 202 SHSLAERVRRERISERMRYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 249
                  8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-9196253No hitNo description
SuperFamilySSF474597.46E-17196267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16198266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7202249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-9204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAQCIPTRAS TNPSVLERQR VRLNWQQQQS TDNTDCIGYN NIESFAPLSS FDQLPKNFVD  60
GERSRNESFG HVHDPIESLG DGWPDFSMVN YPNFCAINVG EKANDKENSD SSKKRKFGNF  120
SNSQVDANNA TENSGSSKGM KEDYVLGERK GATGNQKPQN KKETSTETLK ENGKASRSST  180
TTTPLKTDYI HVRARRGQAT DSHSLAERVR RERISERMRY LQDLVPGCNK ITGKAGMLDE  240
IINYVQSLQR QVEFLSMKLA AVNPRLDFTV DSFFNEEMNI ACNTGLIQGM NILLPHDQLD  300
PSYIQSNALL HQAQVGPSSS GLDMAMSTTQ QMTLQCPMSA PMQLVNTFMD SCYNNVHGSS  360
SLWDQGTVYQ TILRRKRERF KILLFEISKS LIAESEDSFR ILYNLGLFHF TENGREWSYF  420
RP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6610671e-130KM661067.1 Ananas bracteatus clone 41480 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096852.10.0transcription factor bHLH63-like isoform X2
TrEMBLA0A199V9650.0A0A199V965_ANACO; Transcription factor bHLH63
STRINGXP_008784898.11e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-43cryptochrome-interacting basic-helix-loop-helix 1