PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016294.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 300aa    MW: 33446.9 Da    PI: 6.8586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016294.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409e-131579148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.................TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.................kgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++++++ g                 + R +k+c++rw +yl
      Aco016294.1 15 KGLWSPEEDQRLRDYILRYGHGCWSSVPAKAGellhfrfrstlnsddygLQRNGKSCRLRWINYL 79
                     678************************************************************97 PP

2Myb_DNA-binding49.97.3e-1687130348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++ E+e  +++++ +G++ W+ Iar+++ gRt++++k++w++yl
      Aco016294.1  87 MLSQAEEETVINLHAAWGNK-WSQIARHLP-GRTDNEVKNHWNSYL 130
                      56899***************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.9251079IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-191082IPR009057Homeodomain-like
SuperFamilySSF466893.48E-2512126IPR009057Homeodomain-like
SMARTSM007176.6E-91481IPR001005SANT/Myb domain
PfamPF002491.6E-111579IPR001005SANT/Myb domain
CDDcd001672.90E-71879No hitNo description
PROSITE profilePS5129424.72980134IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2383134IPR009057Homeodomain-like
SMARTSM007172.8E-1384132IPR001005SANT/Myb domain
PfamPF002498.3E-1486130IPR001005SANT/Myb domain
CDDcd001671.11E-1089130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGCKTCEKPK ANYRKGLWSP EEDQRLRDYI LRYGHGCWSS VPAKAGELLH FRFRSTLNSD  60
DYGLQRNGKS CRLRWINYLR PGLKRGMLSQ AEEETVINLH AAWGNKWSQI ARHLPGRTDN  120
EVKNHWNSYL KKRVLKTAEG SNSCSSSTKS TDMDNSHTQL VEETKNQIAN SDSPDPVESR  180
TLSSCQTVSQ STGPNSSNEK SQAPIPRILF ADWAYTDPAN GENALGVDGS MNYKLEPSSS  240
YEFYSNITAG DFGQGFEDYG MYRGFNSELE TASQIQGGGF YDPSSMSEVF GCIGPSHAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-22151347108B-MYB
1h8a_C1e-211513427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083991.10.0transcription factor LAF1-like
SwissprotQ9M0K44e-54LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A199W4251e-123A0A199W425_ANACO; Transcription factor LAF1
STRINGXP_008794566.12e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-55myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]