PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016197.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 291aa    MW: 30827.6 Da    PI: 5.5133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016197.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1870118355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  Aco016197.1  70 YLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRG 118
                  88******.**********843...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-2869126No hitNo description
PROSITE profilePS5103221.66769126IPR001471AP2/ERF domain
SMARTSM003807.3E-3469132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-2969126IPR001471AP2/ERF domain
PRINTSPR003671.6E-87081IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2170126IPR016177DNA-binding domain
PfamPF008471.5E-1070118IPR001471AP2/ERF domain
PRINTSPR003671.6E-892108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDLSSYFLSS PSSSSSTPPD HQKKSKRRQP QQQQERSNSR NNNNINNNNN NNAAVAAAET  60
GGGGGGGMRY LGVRRRPWGR YAAEIRDPAT KERHWLGTFD TAEEAAVAYD RAARSLRGPR  120
ARTNFAFPDL PLGSSLTPFL SPDLHHHHNL LFFATPSPTP PPQPSPPPPP PPPPHDPTNL  180
TVDFDFDLDL DFDFSGGPQH SAASVPGLAE AESAAGHCSA SPGGGARSSG FEFMNEYAYG  240
PESAAESGIF FEEGYVHSPL FGPMPAADDA AAAAVADGFQ LGGSASSFFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1867125362ATERF1
3gcc_A4e-1867125362ATERF1
5wx9_A6e-18691251471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106682.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A199V9Q61e-114A0A199V9Q6_ANACO; Ethylene-responsive transcription factor LEP
STRINGGSMUA_Achr3P02360_0012e-70(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.17e-28ERF family protein