PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016114.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 602aa MW: 65805.4 Da PI: 7.8187

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016114.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.8	2.2e-35	177	267	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+++++++sws +++sfvv+++ efa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F kg+k++l++i+ Aco016114.1 177 FLIKTYEMVDDAATDDIVSWSPTETSFVVWNPPEFAARLLPTYFKHNNFSSFIRQLNTYGFHKIDPER---------WEFANDYFIKGQKHQLKNIH 264 9******************999*************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Aco016114.1 265 RRK 267 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.1E-61	173	266	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.67E-35	173	266	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-37	173	266	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.6E-31	177	266	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	177	200	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	215	227	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	216	240	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	228	240	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MAAPTPRPSA NRGLRAAATV EPRRCVVRDG SPSAVLAEHH ARGVASWRTG SRIGCGMGSG 60 LGWAAIMSAM VQRIQGSSAA AAAAAGARWE SLRRAAHAGT TIAAPPSSSR SPAASPPSLA 120 TTMTTPASRR GRGREREGSP LLLLLHHHHC RRRDLLLFLY TVMDGGGGGG GGGPAPFLIK 180 TYEMVDDAAT DDIVSWSPTE TSFVVWNPPE FAARLLPTYF KHNNFSSFIR QLNTYGFHKI 240 DPERWEFAND YFIKGQKHQL KNIHRRKPIH SHSHPPGSLA DSERAALEEE IERLTREKAS 300 LHNDLWRFKQ QQSGAKIQIE DLDRRLLDME QRQLKLIAFV QRAMRNPKFR DNLIKMAGAS 360 LLADSVDAIH KKRRLPGVEV TENSSFYDDH SSTSKPDANN LFQQDFCDKL QLGLCSAMTV 420 ASTQCSDDDN VSKNPECGRA VECLSDTGAS FCSSKNVLVP RQIDEGLFPC HLNLTLASSS 480 MQIDRNQYSN RTQSTEEQEP GNSTELNLAS TSRDDGLRKL VGNSSSTGGD SHANVTSLKE 540 GAPVSNELPA AQPARVNDVF WEQFLTERPG SSDTEEASSS LRANPSGEHQ EDRKQGSEDM 600 K*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MAAPTPRPSA NRGLRAAATV EPRRCVVRDG SPSAVLAEHH ARGVASWRTG SRIGCGMGSG  60
LGWAAIMSAM VQRIQGSSAA AAAAAGARWE SLRRAAHAGT TIAAPPSSSR SPAASPPSLA  120
TTMTTPASRR GRGREREGSP LLLLLHHHHC RRRDLLLFLY TVMDGGGGGG GGGPAPFLIK  180
TYEMVDDAAT DDIVSWSPTE TSFVVWNPPE FAARLLPTYF KHNNFSSFIR QLNTYGFHKI  240
DPERWEFAND YFIKGQKHQL KNIHRRKPIH SHSHPPGSLA DSERAALEEE IERLTREKAS  300
LHNDLWRFKQ QQSGAKIQIE DLDRRLLDME QRQLKLIAFV QRAMRNPKFR DNLIKMAGAS  360
LLADSVDAIH KKRRLPGVEV TENSSFYDDH SSTSKPDANN LFQQDFCDKL QLGLCSAMTV  420
ASTQCSDDDN VSKNPECGRA VECLSDTGAS FCSSKNVLVP RQIDEGLFPC HLNLTLASSS  480
MQIDRNQYSN RTQSTEEQEP GNSTELNLAS TSRDDGLRKL VGNSSSTGGD SHANVTSLKE  540
GAPVSNELPA AQPARVNDVF WEQFLTERPG SSDTEEASSS LRANPSGEHQ EDRKQGSEDM  600
K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	163	266	12	129	Heat shock factor protein 1
5d5v_B	1e-21	163	266	12	129	Heat shock factor protein 1
5d5v_D	1e-21	163	266	12	129	Heat shock factor protein 1
5hdg_A	1e-21	174	266	8	110	Heat shock factor protein 1
5hdn_A	1e-21	174	266	8	110	Heat shock factor protein 1
5hdn_B	1e-21	174	266	8	110	Heat shock factor protein 1
5hdn_C	1e-21	174	266	8	110	Heat shock factor protein 1
5hdn_D	1e-21	174	266	8	110	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111908.1	0.0	heat stress transcription factor A-5 isoform X2
Swissprot	Q6K6S5	1e-163	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A199ULC0	0.0	A0A199ULC0_ANACO; Heat stress transcription factor A-5
STRING	XP_008803687.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-106	HSF family protein

Link Out ? help Back to Top
Phytozome	Aco016114.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]