PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016081.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 294aa    MW: 33573 Da    PI: 4.4843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016081.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-11108150754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    Er+RR r+++++ eLr+l+P+      +K++Ka+i   AveY+++L
  Aco016081.1 108 VSERKRRGRMKEKLYELRSLVPNI-----TKMDKASIIADAVEYVNDL 150
                  57*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.84101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16102165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-12103155No hitNo description
Gene3DG3DSA:4.10.280.106.2E-16103166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9109150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEYQHEDYTN HYTNLDQTYN YWFVDDDLMF FDCGLIDHEL RSMNKDLVPN TLNIDTVSVS  60
QGLSLCLDDS GGGLLSEGLE GFPKENRDDG DSFVTKTRIR RDRSKTLVSE RKRRGRMKEK  120
LYELRSLVPN ITKMDKASII ADAVEYVNDL KSQVKNMEKE LLILETSLKS DQVPQNLLKN  180
TMRNTQLEEA IASPHGAKIL RLNTTEVGDQ RFFFMIECEN KDGVASSVYS AIESLMFFHL  240
ECSNFSLASD RFVLSLTINV EEFDEEIEAS TMKLWVMGAL LKEGFEFEGI CIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112115.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A199W4F60.0A0A199W4F6_ANACO; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (Fragment)
STRINGXP_008779846.11e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-51FER-like regulator of iron uptake