PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco015958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NAC | ||||||||
Protein Properties | Length: 93aa MW: 10871.3 Da PI: 7.5071 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.2 | 2.1e-29 | 9 | 92 | 1 | 82 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lp GfrFhPtdeelv++yLk k +g+ +++evi+e d++k+ePw+Lp k +++++ ew+fF+++d+kya+++r+nrat++gy Aco015958.1 9 LPLGFRFHPTDEELVNHYLKYKFNGRIKSEAEVIPENDVCKCEPWNLPgKsLIRSNDPEWFFFAPKDRKYANEHRSNRATEKGY 92 699************************99999****************6446667888************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-30 | 6 | 92 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.317 | 9 | 92 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-13 | 10 | 92 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MTIPLESLLP LGFRFHPTDE ELVNHYLKYK FNGRIKSEAE VIPENDVCKC EPWNLPGKSL 60 IRSNDPEWFF FAPKDRKYAN EHRSNRATEK GY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-20 | 9 | 92 | 15 | 95 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114975.1 | 3e-52 | NAC domain-containing protein 14-like isoform X1 | ||||
Swissprot | F4JN35 | 1e-36 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A199VEI2 | 4e-60 | A0A199VEI2_ANACO; Protein NTM1-like 9 (Fragment) | ||||
STRING | XP_008811393.1 | 2e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-39 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Aco015958.1 |
Publications ? help Back to Top | |||
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