PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015882.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 333aa    MW: 36672.2 Da    PI: 6.4468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015882.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13169216355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  Av+Y+k+Lq
  Aco015882.1 169 QEHIIAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAVKYLKQLQ 216
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.707166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16169228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-12171220No hitNo description
SMARTSM003531.3E-14172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MATTQWFSQL EMDEGSFFQQ WEETAAAAAD SLHHFTEEQL SILGFGQQDQ QQQLAQAICT  60
DKPRKVAPKS CSWDSCITTT TTTTTTTTTT DQSSSPSFLS FSNSDVEQPS CHLHDHHHQQ  120
LKKEEVEISF PHHQQGGVKR KFEALVSEGL RKVNTTTTAA TTRPVSQNQE HIIAERKRRE  180
KLSQRFIALS AIIPGLKKMD KASVLGDAVK YLKQLQEKVK TLEEQSRKRT VETAVLVKKS  240
QLSPDDESSS CDGESSAIDG SSCGPEIEAK MSEKSVLVKI HCENRKGVLV RALSEIESHR  300
LAIVSTSVVP FAGSSIDITP TVVPHAILVE DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12171225963Transcription factor MYC2
5gnj_B1e-12171225963Transcription factor MYC2
5gnj_E1e-12171225963Transcription factor MYC2
5gnj_F1e-12171225963Transcription factor MYC2
5gnj_G1e-12171225963Transcription factor MYC2
5gnj_I1e-12171225963Transcription factor MYC2
5gnj_M1e-12171225963Transcription factor MYC2
5gnj_N1e-12171225963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6610751e-116KM661075.1 Ananas bracteatus clone 41653 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086101.10.0transcription factor bHLH18-like
TrEMBLA0A199VF131e-169A0A199VF13_ANACO; Transcription factor bHLH25
STRINGXP_008790398.12e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-44bHLH family protein