PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015586.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 409aa MW: 43818.9 Da PI: 9.966

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015586.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	51	112	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Aco015586.1 51 KEKALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 112 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	47	109	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	53	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MDTTQWPHQE LGLVKPIEEM MAGVGSGAAS GAGGASRPPA QLVERRARPQ KEKALNCPRC 60 NSTNTKFCYY NNYSLTQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSAPSTSFS 120 TTTTTTTTTT TTNNNNNNSN KKLMTHDISL SSPSHNIKFS QSQDLNLAFP YHSMPHEYTE 180 FPNNSSCNTT TTANNININT SGSSRNNPYT ANSTVGAFSA MELLRSGISS SRGVGSFVPM 240 PLQEYPGGLG FLHDFRPPTT LGFPLDHGVG GGGGGGGGGG EVAATVGGTG NYESSLQESR 300 LLFPFEDLKP AVPSNSGELE HSRMQSGDPP GFWNGMIHGG GGSWLASKGI NGEMMTLFHV 360 GIAPWSNYNG GRKKGKKFIR CMTRPFIPTK ILASMNKARK VLLSEENK*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MDTTQWPHQE LGLVKPIEEM MAGVGSGAAS GAGGASRPPA QLVERRARPQ KEKALNCPRC  60
NSTNTKFCYY NNYSLTQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSAPSTSFS  120
TTTTTTTTTT TTNNNNNNSN KKLMTHDISL SSPSHNIKFS QSQDLNLAFP YHSMPHEYTE  180
FPNNSSCNTT TTANNININT SGSSRNNPYT ANSTVGAFSA MELLRSGISS SRGVGSFVPM  240
PLQEYPGGLG FLHDFRPPTT LGFPLDHGVG GGGGGGGGGG EVAATVGGTG NYESSLQESR  300
LLFPFEDLKP AVPSNSGELE HSRMQSGDPP GFWNGMIHGG GGSWLASKGI NGEMMTLFHV  360
GIAPWSNYNG GRKKGKKFIR CMTRPFIPTK ILASMNKARK VLLSEENK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085201.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
Refseq	XP_020085202.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q9SXG8	1e-58	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A199V8V0	0.0	A0A199V8V0_ANACO; Dof zinc finger protein DOF4.6
STRING	XP_008790518.1	6e-98	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco015586.1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]