PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco015498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 620aa MW: 68904.8 Da PI: 7.0379 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 395 | 432 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Aco015498.1 395 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 432 664459******************************88 PP | |||||||
2 | BELL | 107.9 | 6.2e-35 | 257 | 326 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+kakL s+leeVd+rY++y+eq+++v+ +Feavag g+a++Y slA+k++SrhFrcL+d i++qi Aco015498.1 257 LELQKRKAKLYSMLEEVDRRYRRYCEQMRAVVLAFEAVAGEGAAAVYSSLASKTMSRHFRCLRDGIVGQI 326 589*****************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-57 | 191 | 324 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-46 | 197 | 322 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 373 | 436 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-9 | 376 | 440 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.77E-11 | 376 | 437 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-17 | 377 | 443 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-28 | 379 | 443 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 393 | 432 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 620 aa Download sequence Send to blast |
MAHEYQHQQH HHHHHHHQPD FISATNNAAA ATAVALHGFG TNHELYDLQA GMEMLGIPSK 60 QPHAQNVADG SWKVFFPKAG SSSTIGFSQP STDAGLMGAP EPNMGTWPPQ SNRMAVVDQS 120 IRCLLPSEGG EQANRELSLS LCNADPSGSG FHYQVEDASL RKPEDSLHQQ EVFFFGPSAA 180 AASAPMASLY QQHPQQLKNS KYLLPAQELL NEFCSLGKEH GSSTLKRQSK ISKQWDEGGS 240 SSSSSPWTQP LHTLEILELQ KRKAKLYSML EEVDRRYRRY CEQMRAVVLA FEAVAGEGAA 300 AVYSSLASKT MSRHFRCLRD GIVGQISATR KAMGEKDPVA PGTTRGETPR LKLLDQCLRQ 360 QKAFQQPGGT MESHPWRPQR GLPERSVSIL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS 420 QVSNWFINAR VRLWKPMVEE MYMEELKEQE NQSPRTTTTT IHEDNDHNNN HHHHHHLESN 480 PNPNPNPNPN PNLIEQKPTP VQLLHDSGSL ASIINSKGAA EPRVESFGFV DLDFASYGQC 540 GGHGARGGVS LTLGLQRHDN ASQAPTLLFP RSDHHHHQHI EENQQQASQF SINMDGAEGS 600 QHLPYRNLMG AQLLHDLAG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 382 | 440 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 382 | 440 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020084170.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-120 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A199UUQ3 | 0.0 | A0A199UUQ3_ANACO; Homeobox protein BEL | ||||
STRING | XP_008807227.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-103 | TALE family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco015498.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|