PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco015479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18052.2 Da PI: 8.2433 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Aco015479.1 88 HECSICGLGFSMGQALGGHMRRH 110 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.2E-9 | 39 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.19E-7 | 40 | 110 | No hit | No description |
PROSITE profile | PS50157 | 9.806 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.1E-11 | 88 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
METEKAANLL LSLSSTHTRA IDEAIRRRKK ATRGAADGAF VCKTCSREFD SFQALGGHST 60 SHNRARSLDP AATRKKTTTT TTTTTQKHEC SICGLGFSMG QALGGHMRRH RAAMEDSAAA 120 TVGARRGEEG FDLNQLPPLE DEEENAPEIC GGGNGRGSER RLLELFM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114177.1 | 1e-119 | zinc finger protein ZAT12-like | ||||
Swissprot | Q9LX85 | 8e-20 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A199UMI8 | 1e-115 | A0A199UMI8_ANACO; Zinc finger protein ZAT8 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 8e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco015479.1 |