PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015411.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 370aa    MW: 39780.3 Da    PI: 6.3164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015411.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-1762107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
      Aco015411.1  62 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 107
                      79******************************.***********985 PP
2Myb_DNA-binding55.91e-17114158147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
      Aco015411.1 114 RKPFTEEEDRIIISAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 158
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.03357108IPR017930Myb domain
SuperFamilySSF466894.31E-3159155IPR009057Homeodomain-like
SMARTSM007174.0E-1561110IPR001005SANT/Myb domain
PfamPF002491.1E-1662107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2663115IPR009057Homeodomain-like
CDDcd001676.59E-1464106No hitNo description
PROSITE profilePS5129426.863109163IPR017930Myb domain
SMARTSM007178.2E-17113161IPR001005SANT/Myb domain
PfamPF002492.1E-15114158IPR001005SANT/Myb domain
CDDcd001673.55E-12116159No hitNo description
Gene3DG3DSA:1.10.10.602.7E-23116162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
METELAATSA ASSPPSPPPP PSSLSPPPST SAEGSSAAAA AEEETAPPGG GGGGAAAEDR  60
VKGPWSPEED AVLSRLVSKF GARNWSLIAR GIPGRSGKSC RLRWCNQLDP YVKRKPFTEE  120
EDRIIISAHA IHGNKWASIA RLLEGRTDNA IKNHWNSTLR RKCFLTDQYK TTTAAAATAC  180
DAIENASPER VKASSEENQS LGDMNSNKTM EGRDYSFENI SENGKEVVYV KEDPSTVPES  240
KDPPYLFRPV ARVSAFRPYN HLGQSVGPEL CRPIQMHDSA FQASVEPQVP SRCGHGCCNI  300
RNEACSKRSL LGPEFIEFVE TPPISSHELA AVVSDISSIA WVKSGLQSSS ANSFLQPTWP  360
SSHMRGTCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-41591624107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6610800.0KM661080.1 Ananas bracteatus clone 41697b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113904.10.0transcription factor MYB25-like
SwissprotQ425757e-83MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A199VJ870.0A0A199VJ87_ANACO; Transcription factor MYB44
STRINGXP_008785463.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-84myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]