PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015386.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 306aa    MW: 33486.4 Da    PI: 7.2546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015386.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-103481247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+eE + + +a ++l  +   +W+++a+ ++ g+t+ +++ +++++
      Aco015386.1 34 GAWTQEENKAFEEALARLDRDdpdRWARVAAAIP-GKTEGDVIAHYRQL 81
                     79*****************99*************.***********986 PP
2Myb_DNA-binding414.5e-13146190347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G g+W+ I+r + + Rt  q+ s+ qky
      Aco015386.1 146 PWTEKEHKLFLMGLKKYGRGDWRNISRNFVTSRTSTQVASHAQKY 190
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0763186IPR017884SANT domain
SMARTSM007176.3E-103284IPR001005SANT/Myb domain
PfamPF002495.3E-93481IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-103489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-53481IPR009057Homeodomain-like
CDDcd001671.51E-73581No hitNo description
PROSITE profilePS5129416.035139195IPR017930Myb domain
SuperFamilySSF466891.57E-16141195IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-17142193IPR006447Myb domain, plants
SMARTSM007172.2E-11143193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11143189IPR009057Homeodomain-like
PfamPF002492.0E-10146190IPR001005SANT/Myb domain
CDDcd001671.39E-9146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMKESWMEVL PPTPPHLASR FLSQSRGGGG GGGGAWTQEE NKAFEEALAR LDRDDPDRWA  60
RVAAAIPGKT EGDVIAHYRQ LESDVSFIEA GLVPFPRYAH GPSSAFTLDW DDDACCRLDG  120
LTDAYCVAAK RSAGRGPDQE RKKGVPWTEK EHKLFLMGLK KYGRGDWRNI SRNFVTSRTS  180
TQVASHAQKY FIRLNSGGKD KRRSSIHDIT TVNLPDDDRP PSPSQPPVVT TMSSSPAPSS  240
TAISDQISMI VDSKRHNEAA TSVLNSSVHS NPFVPSTTFG IDPYGLKLES QDLPRGILND  300
SFVGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-183198673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113766.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H73e-89DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3XL351e-118A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRINGXP_008785419.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-72Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]