PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015210.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 333aa    MW: 36964.3 Da    PI: 4.5264
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.94.8e-26451332102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed++++ ++sws+  nsfvv+d + fa+++Lp+yFkh+nf+SF+RQLn+Y+       ++         eF+++ F  g+++ll++ik
   Aco015210.1  45 FLTKTFEMVEDPATDGVVSWSRGRNSFVVWDAHAFATTLLPRYFKHNNFSSFIRQLNTYEG-----GSG-------PLEFANRDFLGGQRHLLKNIK 129
                   9**********************************************************63.....233.......489****************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r ++
   Aco015210.1 130 RGAT 133
                   9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-4341131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-2941130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.29E-2841130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-144568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-2345130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-148395IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-1496108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDRFLYNPFI RDILLRKEGE GEEEEEEEEA PQPMAGLQDA GPPPFLTKTF EMVEDPATDG  60
VVSWSRGRNS FVVWDAHAFA TTLLPRYFKH NNFSSFIRQL NTYEGGSGPL EFANRDFLGG  120
QRHLLKNIKR GATRRPLTLS HYGGVESSSG FVQLGKFGAE AEAEQQQGSR AQLLAMEQRV  180
HGTERRHKQT MSFLARAVRN PAFLQQLAGF RGECELLLSG AGKRRRLPLN PFAGNVDPAV  240
AGAGMQSLLP TIHDRDDTVD VEPNATGVVT DMIWEELLND APVLGSEVQD EQQEIEIEVE  300
EFAAEPCRWG DDEVHDLVEQ MGIVGNLQQT VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-214013312122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088300.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-2-like
TrEMBLA0A199W3S70.0A0A199W3S7_ANACO; Heat stress transcription factor A-2
STRINGXP_008782512.14e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-74heat shock transcription factor A2