PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015133.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26999.1 Da    PI: 4.5892
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015133.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-193386356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+ +f++eq++ Le++Fe + ++  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  Aco015133.1 33 KKKRFSEEQIKSLESMFETQTKLEPRQKLQLAKELGLQPRQVAIWFQNKRARWK 86
                 5667*************************************************9 PP
2HD-ZIP_I/II121.83.5e-3932124193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kk+r+s+eq+k+LE++Fe+++kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++y+aL++ yd l ++ ++L+ke++ L ++l++
  Aco015133.1  32 NKKKRFSEEQIKSLESMFETQTKLEPRQKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYSALRSDYDLLLASFDSLKKEKHMLLKQLQK 124
                  59**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.0542888IPR001356Homeobox domain
SuperFamilySSF466897.27E-193090IPR009057Homeodomain-like
SMARTSM003891.5E-163192IPR001356Homeobox domain
CDDcd000869.70E-163389No hitNo description
PfamPF000465.0E-173386IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-193495IPR009057Homeodomain-like
PRINTSPR000316.7E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000316.7E-66884IPR000047Helix-turn-helix motif
PfamPF021832.8E-1388129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDGEDQLDHA AAAAEAALAA DDGSCCGSWL MNKKKRFSEE QIKSLESMFE TQTKLEPRQK  60
LQLAKELGLQ PRQVAIWFQN KRARWKSKQL EREYSALRSD YDLLLASFDS LKKEKHMLLK  120
QLQKLNGLLD KPQEGRSRCY GDSENADLNG ATDKRPNFQM KEESDARVVP YSDEEDKKFP  180
CLISEDEAEL YTVQQQACST LTSEVEDQFG FQTSWPSDQS CTSTQWWEFW PMNE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457302e-83AF145730.1 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA, partial cds.
GenBankAK0597552e-83AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence.
GenBankAK1031602e-83AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence.
GenBankAP0056812e-83AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBankAP0149652e-83AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-83CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8308472e-83CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114943.11e-173homeobox-leucine zipper protein HOX6-like
SwissprotQ651Z52e-57HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH352e-57HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A199USG51e-171A0A199USG5_ANACO; Homeobox-leucine zipper protein HOX6
STRINGGSMUA_Achr1P18670_0012e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-43homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]