PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25557.9 Da PI: 5.5036 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.5e-08 | 71 | 119 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RRd++N++f eL ++l + + K++K +iL A++ + +L Aco014880.1 71 ASKACREKMRRDKLNERFLELGSVLDPG---KPLKVNKEAILSDATRMVIQL 119 57789**********************8...89*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.77E-6 | 64 | 124 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-12 | 66 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.712 | 68 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 68 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-6 | 72 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-6 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 9.60E-4 | 124 | 157 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.5E-4 | 134 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGSPENPNWY LDCALIDELP VADGGLCWSA QGFNSSSNVS LETDGPCVNS GGSNESGSRK 60 RIRSESCRRP ASKACREKMR RDKLNERFLE LGSVLDPGKP LKVNKEAILS DATRMVIQLR 120 DDAQKLKDSN ESLQAKIEEL KAEKNELRDE KQRLKAEKDG LEQQIKILNS RPSFIPQPPL 180 IPTAFAARNH SEGQKLVMPI IGYPGFPMWQ FMPPSDVDTS QDTENCSPVA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102316.1 | 1e-169 | transcription factor ILR3-like isoform X1 | ||||
Swissprot | Q9FH37 | 6e-82 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A199VCX1 | 1e-168 | A0A199VCX1_ANACO; Transcription factor ILR3 | ||||
STRING | GSMUA_Achr3P23080_001 | 1e-112 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco014880.1 |