PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 24296.2 Da PI: 10.4036 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.4 | 1.5e-28 | 11 | 77 | 54 | 121 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121 + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++v + +g +vg++ktLvfy+grapkg+ktdW Aco014816.1 11 GGKEWYFFSLRDRKYATGQRTNRATQSGYWKATGKDRSVSR-RGVVVGMRKTLVFYQGRAPKGRKTDW 77 679************************************99.999*********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.338 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-29 | 9 | 88 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-10 | 15 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MHGAEVACVG GGKEWYFFSL RDRKYATGQR TNRATQSGYW KATGKDRSVS RRGVVVGMRK 60 TLVFYQGRAP KGRKTDWGDW VLCRVLNKSR GLTSMPVTQT WHNVDSSSDP PPLPPLVDTF 120 TAFDRAAPSF EGHEQVPCFS NSPLLSRRAN MGGILDILSR DTNAMKGAMN HLTRFQGASN 180 SNSNSNSNSN PNSNLAQGHL ESYLVEHGLT NMFNTFSASM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-25 | 11 | 89 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-25 | 11 | 89 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-25 | 11 | 89 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-25 | 11 | 89 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-25 | 11 | 89 | 72 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-25 | 11 | 89 | 69 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-25 | 11 | 89 | 69 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102324.1 | 1e-130 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-43 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A199VDS4 | 1e-159 | A0A199VDS4_ANACO; NAC domain-containing protein 21/22 | ||||
STRING | XP_008806836.1 | 2e-74 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 7e-32 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco014816.1 |