PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco014788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 25532.9 Da PI: 9.8285 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 128 | 182 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Aco014788.1 128 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 182 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.4 | 1.4e-41 | 128 | 218 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +lk Aco014788.1 128 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQREVAELR-ALK 218 69*************************************************************************************9.565 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 103 | 185 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 118 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 124 | 184 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-15 | 126 | 188 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.04E-15 | 128 | 185 | No hit | No description |
Pfam | PF00046 | 9.0E-16 | 128 | 182 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 159 | 182 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 9.9E-23 | 184 | 227 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.4E-11 | 184 | 218 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MSKGFREREE RERSGGGGGG GGGGYGDPLV SLSLLPPSAS PKSLLGFLPP WAPLETRNVD 60 VAIQRFDVNR PPPPPPLLLE ETEEGTAMSP SPNNSAVSAP KPGGSPAGGD GERAGSKGSD 120 EDENGLGRKK LRLSKEQSAF LEESFKEHNT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR 180 TKLKQTEVDC EYLKRCCETL TEENRRLQRE VAELRALKAA AAAHPFVLRR FVL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 176 | 184 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY559046 | 1e-78 | AY559046.1 Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 11 (hox11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020110186.1 | 1e-167 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q67UE2 | 1e-70 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A199UV12 | 8e-97 | A0A199UV12_ANACO; Homeobox-leucine zipper protein HOX11 | ||||
STRING | XP_008791862.1 | 2e-72 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-39 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco014788.1 |