PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014686.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Dof
Protein Properties Length: 382aa    MW: 41404.3 Da    PI: 7.8095
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014686.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.4e-3996155261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++k+++cprCds +tkfCy+nny++sqPr+fCk+C+ryWt+GG+lrnvPvG+grrk +ks
  Aco014686.1  96 PDKIVPCPRCDSLDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGSLRNVPVGAGRRKTNKS 155
                  7899****************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2886152IPR003851Zinc finger, Dof-type
PfamPF027019.3E-3298154IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.621100154IPR003851Zinc finger, Dof-type
PROSITE patternPS013610102138IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEERRDQAIK LFGKMIPLQG SGEDSIGAGE EENKLQQRVP EKQLAVQSIS LEKIDPLIPP  60
PTKSENGAKP EAKEAENEKQ RKPNGDQDEE TAARKPDKIV PCPRCDSLDT KFCYFNNYNV  120
SQPRHFCKNC QRYWTAGGSL RNVPVGAGRR KTNKSSPCFR GVNLNPAHPT AVLSFGSDLP  180
LCESMASVLN LESCEDQNSS QSSMTGSSST TDDGTGTASA AAAAVVAQIP CVNGFPWAYP  240
TSPASASASA SAFAFPLYYP AVAYWGYTVP LHPPQHNSPA LGKHSREGDK LDDTDSEKTC  300
EEKRFWIPKT LRIDDPAAAA RSSIWATIGF KNEKSSAVCG GGLFKPFRSK DDCKKSTSER  360
PQVLQANPAA FARSMNFRES S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0351622e-47BT035162.1 Zea mays full-length cDNA clone ZM_BFb0042O20 mRNA, complete cds.
GenBankBT0673162e-47BT067316.1 Zea mays full-length cDNA clone ZM_BFc0006N22 mRNA, complete cds.
GenBankEU9436272e-47EU943627.1 Zea mays clone 1638962 mRNA sequence.
GenBankEU9571712e-47EU957171.1 Zea mays clone 1584660 hypothetical protein mRNA, complete cds.
GenBankJX4284792e-47JX428479.1 Zea mays subsp. mays clone pUT3075 DOF21 C2C2-DOF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110693.10.0cyclic dof factor 1-like
SwissprotQ93ZL53e-69CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A2H3YYY81e-102A0A2H3YYY8_PHODC; cyclic dof factor 2
STRINGXP_008806017.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-65cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]