PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014685.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 375aa    MW: 41888.3 Da    PI: 6.7024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014685.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-1698143147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
      Aco014685.1  98 RGHWRPAEDSKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 143
                      899*****************************.***********996 PP
2Myb_DNA-binding54.82.1e-17150193146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
      Aco014685.1 150 RSAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 193
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.76393144IPR017930Myb domain
SuperFamilySSF466899.36E-2897191IPR009057Homeodomain-like
SMARTSM007179.8E-1497146IPR001005SANT/Myb domain
PfamPF002498.0E-1698143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2599151IPR009057Homeodomain-like
CDDcd001675.66E-13101142No hitNo description
PROSITE profilePS5129426.511145199IPR017930Myb domain
SMARTSM007172.0E-14149197IPR001005SANT/Myb domain
PfamPF002493.7E-14150192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20152198IPR009057Homeodomain-like
CDDcd001671.41E-11152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAFHHCGGSG GGMSMSYSSS SSMESYTFPL MGSCINLEEQ NPKPNTNEEN MGGGDHDHQD  60
HEHEHEHEDE HENTTTNEGG ETLGTTSVDC GQSKLCVRGH WRPAEDSKLR ELVALYGPQN  120
WNLIAEKLEG RSGKSCRLRW FNQLDPRINR SAFSEEEEEK LMAAHRLYGN KWAMIARLFP  180
GRTDNAVKNH WHVIMARKYR EHSNSYRRRK LMNHHQSPPS LAHRRLEDEP AMFEAPARPS  240
SSSSPCGFSH SSSSTPFPSF PLPGAVNGGF SNGSECMMGY VGVQRPFHFL SHGAQKKIGF  300
YSSSFWEKPR DEPFTGFLHH HSPLMLTMQH PSHLSFFSES TASAASTESA GVEDNRENIH  360
IPPTFIDFLG VGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-34971986107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625920.0KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110696.10.0myb-related protein Myb4-like
TrEMBLA0A199UGS20.0A0A199UGS2_ANACO; Transcription factor MYB44
STRINGXP_008783843.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.11e-73myb domain protein 117