PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 24812.9 Da PI: 6.0193 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.5 | 5.5e-12 | 28 | 67 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T+eEd ++ + +q G W+ Ia+ ++ gRt+ ++k++w+ Aco014580.1 28 FTEEEDRIISSLYNQKGRC-WSVIAAQLP-GRTDLSIKNYWN 67 9****************77.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.114 | 1 | 19 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-9 | 5 | 31 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.1E-20 | 5 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.113 | 20 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-11 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-10 | 27 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-9 | 28 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-17 | 32 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MLGLNRCGRS CRSRWLNYLR PGLKIGGFTE EEDRIISSLY NQKGRCWSVI AAQLPGRTDL 60 SIKNYWNCKL SKKVVSSKNK MLTLRPKPDR LPSAPITPSS TETQKPDHLS FSRKPSTSDG 120 LGSKLDTDES AQKTKLLTSS SSGELISESS SSSANVASEN LVADAGASAL VNTECRPPEF 180 NELVDWCVMS PPRDLVIDYS YSSSIIDGLE DINSSDMLLS DEPWW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-17 | 6 | 74 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-17 | 6 | 74 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-17 | 6 | 74 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-17 | 6 | 74 | 37 | 105 | C-Myb DNA-Binding Domain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020094690.1 | 1e-162 | myb-related protein 330-like | ||||
TrEMBL | A0A199UI98 | 1e-161 | A0A199UI98_ANACO; Transcription factor RAX3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-30 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Aco014580.1 |