PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco014193.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 364aa MW: 37055 Da PI: 8.9731

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014193.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	82	142	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCy+nnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+r+nk+s+ Aco014193.1 82 PEPALKCPRCDSTNTKFCYFNNYSLSQPRYFCKTCRRYWTRGGTLRNVPVGGGCRRNKRSK 142 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-33	72	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.6E-33	85	140	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	86	140	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	88	124	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MVFSSVPVYL DPPNWNQQQS HQQHQSASGG GGGGLSDVAH PLPPGLQAAP RPEAPSMAAA 60 AGGPARPGSM ADRARLAKIP QPEPALKCPR CDSTNTKFCY FNNYSLSQPR YFCKTCRRYW 120 TRGGTLRNVP VGGGCRRNKR SKSSSGGSSK SASASAADRH ISGTSSSSST AAGGGGGSAN 180 IPTTIPPPPT QLPFMASLHS LAEYTGGASN LGLAFSGIQP LEPIDYHIGS SSALGLEHWR 240 LQQIQQFPFL GGVEPPPPPQ APPSLTIPGL YPFDGEGGND GFSTQVLPKI SSSGLVSQLA 300 SVKMEDNSQG LSLARQYLGV PGNDQYWGGG GGGGGGGSGG GSGGGGWTSD LSGFNSSSSG 360 NIL*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MVFSSVPVYL DPPNWNQQQS HQQHQSASGG GGGGLSDVAH PLPPGLQAAP RPEAPSMAAA  60
AGGPARPGSM ADRARLAKIP QPEPALKCPR CDSTNTKFCY FNNYSLSQPR YFCKTCRRYW  120
TRGGTLRNVP VGGGCRRNKR SKSSSGGSSK SASASAADRH ISGTSSSSST AAGGGGGSAN  180
IPTTIPPPPT QLPFMASLHS LAEYTGGASN LGLAFSGIQP LEPIDYHIGS SSALGLEHWR  240
LQQIQQFPFL GGVEPPPPPQ APPSLTIPGL YPFDGEGGND GFSTQVLPKI SSSGLVSQLA  300
SVKMEDNSQG LSLARQYLGV PGNDQYWGGG GGGGGGGSGG GSGGGGWTSD LSGFNSSSSG  360
NIL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104433	4e-67	AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBank	AP014959	4e-67	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	4e-67	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020101326.1	0.0	dof zinc finger protein DOF2.4-like
TrEMBL	A0A199W666	1e-143	A0A199W666_ANACO; Dof zinc finger protein DOF3.6
STRING	XP_008802760.1	1e-140	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-45	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Aco014193.1