PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014182.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 568aa    MW: 62430 Da    PI: 8.3109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014182.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-1762108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
      Aco014182.1  62 KGGWTPQEDETLRKAVEAYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108
                      688*****************************.************986 PP
2Myb_DNA-binding63.44.3e-20114160148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+++++vk++G+  W+ Iar ++ gR +kqc++rw+++l
      Aco014182.1 114 KGPWTPEEDEIIIELVKKYGPAKWSVIARSLP-GRIGKQCRERWHNHL 160
                      79******************************.*************97 PP
3Myb_DNA-binding54.42.9e-17166209146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT++E+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
      Aco014182.1 166 KDAWTADEEISLINAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 209
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.77257108IPR017930Myb domain
SuperFamilySSF466894.74E-1558114IPR009057Homeodomain-like
SMARTSM007171.5E-1561110IPR001005SANT/Myb domain
PfamPF002491.0E-1562108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2264120IPR009057Homeodomain-like
CDDcd001677.18E-1465108No hitNo description
PROSITE profilePS5129432.615109164IPR017930Myb domain
SuperFamilySSF466895.39E-32111207IPR009057Homeodomain-like
SMARTSM007176.1E-19113162IPR001005SANT/Myb domain
PfamPF002491.9E-18114160IPR001005SANT/Myb domain
CDDcd001676.35E-17116160No hitNo description
Gene3DG3DSA:1.10.10.606.6E-28121167IPR009057Homeodomain-like
SMARTSM007174.3E-16165213IPR001005SANT/Myb domain
PROSITE profilePS5129421.806165215IPR017930Myb domain
PfamPF002491.5E-15166209IPR001005SANT/Myb domain
CDDcd001671.25E-12168211No hitNo description
Gene3DG3DSA:1.10.10.603.1E-23168215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MEAMAAVKIE QGCVENKQLT AASSPSLSDG SCGLSSMSPA VSSPPTASPS HKRTTGPIRR  60
AKGGWTPQED ETLRKAVEAY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTPE  120
EDEIIIELVK KYGPAKWSVI ARSLPGRIGK QCRERWHNHL NPKIKKDAWT ADEEISLINA  180
HRVHGNKWAE IAKVLPGRTD NSIKNHWNSS LKKKLEFYSQ TGKLPPVPKP ALNNGTKDVP  240
KLVNEQVYPK NTKSLLGTTG SGSAHFSPPT ELATMENCKE ELQLFSPSNS TGESARGLDD  300
SSINCRILPH ETDHTSSKGD SVDDSAEISN TAETDQASKR TRGMLFSEDS PFGSLYYEPP  360
QLEDFGSLFK AYSPILHAYS SDVVRSPAGY LTPPCGFKKG SVQLSAESIL KSAAMSYPNT  420
PSIIRRRKRE TQTPLPLDSN TQTNEWKDQD SACSPIGRES GSNQEVFKES TSHSSEGKSI  480
NITPPYRLRS KRTSMIKSVE KQLDFNLKDD FDGSAKFQSL ASQNSSAINT ISSTDFSSMQ  540
GMALNEHPVG LEDLAKDFAL TTNLGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69612155159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69612155159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102091.10.0uncharacterized protein LOC109719716 isoform X1
SwissprotQ0JHU71e-153MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A199W6270.0A0A199W627_ANACO; Myb-related protein 3R-1
STRINGXP_008802730.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-132myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]