PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014156.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24680.2 Da PI: 8.1923 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 74 | 121 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +K++iL A++ +++L Aco014156.1 74 TKACREKLRRDRLNDRFTELCSILDPG---KPPKADKVAILSDATRLLNQL 121 5678**********************9...99**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.163 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-7 | 74 | 126 | No hit | No description |
Pfam | PF00010 | 7.3E-8 | 74 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-12 | 76 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-6 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-12 | 77 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSGGQSNGGG WLIDYGLVDE IQGSDFIWGS QINDDPMVSS VMFGFDVSHK QEGCADNSCP 60 KKRTRPESCA APGTKACREK LRRDRLNDRF TELCSILDPG KPPKADKVAI LSDATRLLNQ 120 LHLEAQKLKK SNEALQDSIK NLKAEKSELR DEKMRLKAEK DRLEQMLKGV SAAPQFIPYP 180 TAPVVAYNKA VPYPNYPPAG VWQWVPPAVL DTSKDSVLWP PVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101359.1 | 1e-165 | transcription factor bHLH115-like | ||||
Swissprot | Q9FH37 | 1e-60 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A199VLU8 | 1e-164 | A0A199VLU8_ANACO; Transcription factor ILR3 | ||||
STRING | BRADI2G23520.1 | 3e-97 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco014156.1 |