PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014113.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 335aa    MW: 36658.9 Da    PI: 7.6288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014113.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-094894347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W++eE + + +a ++  g+   +W+++a++++ g+t  +++s +q +
      Aco014113.1 48 DWSPEENKVFEEALARIDGDrpdRWERVAEMIP-GKTVADVISQYQEL 94
                     6********************************.***********975 PP
2Myb_DNA-binding43.67e-14161205347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++ + k++G+g+W+ I+r +  +R + q+ s+ qky
      Aco014113.1 161 PWTEEEHKRFLMGLKKHGKGDWRNISRNFVFTRNPTQVASHAQKY 205
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.4484496IPR017884SANT domain
SMARTSM007171.1E-74597IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-1047102IPR009057Homeodomain-like
PfamPF002491.1E-74894IPR001005SANT/Myb domain
CDDcd001673.76E-64994No hitNo description
Gene3DG3DSA:1.10.10.602.1E-11152207IPR009057Homeodomain-like
PROSITE profilePS5129418.24154210IPR017930Myb domain
SuperFamilySSF466895.46E-16156210IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-14157208IPR006447Myb domain, plants
SMARTSM007173.9E-12158208IPR001005SANT/Myb domain
PfamPF002496.0E-12161205IPR001005SANT/Myb domain
CDDcd001673.35E-10161205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMMQEAWMEV LPPAAASCFP ASSLFLSEMG MGMGMGMGKG EGRGKGNDWS PEENKVFEEA  60
LARIDGDRPD RWERVAEMIP GKTVADVISQ YQELENDVSY IEAGLIPFPH YDSSSSFVLD  120
WEGGARTNHS YCCVGTGTGT GTGKRSGPRG SSDQERKKGV PWTEEEHKRF LMGLKKHGKG  180
DWRNISRNFV FTRNPTQVAS HAQKYYNRLN SGGKDKRRSS IHDITTVNLP DDRPPSPSQS  240
SSSLSMLTPQ PSTGNAAASP LSDQYSAVLD PSRPNEAASA FKLSEQHPFQ FVQSPLGAAP  300
YGTVKIARES SYSTPPRDAA ANRQSVLFQV QPFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1743114576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6646630.0KM664663.1 Ananas bracteatus clone 49643a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101803.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-84DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A199UN640.0A0A199UN64_ANACO; Transcription factor DIVARICATA
STRINGXP_008785419.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-81MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]