PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014104.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 429aa    MW: 48127.7 Da    PI: 7.4133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014104.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-18124170148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd llv++v q+G ++W+ Ia+ +  gR +kqc++rw+++l
      Aco014104.1 124 KGQWTAEEDRLLVQLVDQHGVRRWSQIAKNLV-GRIGKQCRERWHNHL 170
                      799*****************************.*************97 PP

2Myb_DNA-binding58.91.1e-18176218145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  WT+eE+  lv+a+k++G++ W+ Ia++++ gR+++++k++w+
      Aco014104.1 176 KETWTEEEERMLVEAHKKFGNK-WAEIAKHVP-GRSENSIKNHWN 218
                      578*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.158119174IPR017930Myb domain
SuperFamilySSF466891.44E-31121217IPR009057Homeodomain-like
SMARTSM007171.7E-17123172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-28125178IPR009057Homeodomain-like
CDDcd001676.43E-16127170No hitNo description
PfamPF139217.8E-19127187No hitNo description
PROSITE profilePS5129422.594175225IPR017930Myb domain
SMARTSM007171.3E-18175223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-22179223IPR009057Homeodomain-like
CDDcd001671.56E-9185221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MERGFGFREL VEKRMRSLRP PPLLAPLERF LSSSSTGELC LSAVKGEETA VNYPSGPSVL  60
DHITSAIGVP PSGILLNESS FFGGLLVGNG EEAARRESNR GSKKAQSSSS SSSTTTVPAK  120
NVVKGQWTAE EDRLLVQLVD QHGVRRWSQI AKNLVGRIGK QCRERWHNHL RPDIKKETWT  180
EEEERMLVEA HKKFGNKWAE IAKHVPGRSE NSIKNHWNAT KRRQNAKRRS KRKTGSRGGK  240
PEPSILQDYI RSKTISNLKD NCTRRNDPPN LIPSNATYGV YGAMQQPMET NLNQSVNSES  300
VEFDAYHVGN MHDPCIHDSL DDAYYLWGLD DCMLMASPPS LDWVYHEEVK GEFYEMGSNQ  360
DKYTGEPHLL REEHASPGHV FAAEGDEFFF KDQTSSSSKG DMDLMEMISW QMSQSQSRSQ  420
SSSCNGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-441222242104C-Myb DNA-Binding Domain
1msf_C4e-441222242104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220231KRRQNAKRRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923245.11e-111transcription factor MYB119-like
TrEMBLA0A199UNH80.0A0A199UNH8_ANACO; Transcription factor MYB98
STRINGXP_008785587.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-59myb domain protein 98