PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 429aa MW: 48127.7 Da PI: 7.4133 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 124 | 170 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd llv++v q+G ++W+ Ia+ + gR +kqc++rw+++l Aco014104.1 124 KGQWTAEEDRLLVQLVDQHGVRRWSQIAKNLV-GRIGKQCRERWHNHL 170 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 176 | 218 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eE+ lv+a+k++G++ W+ Ia++++ gR+++++k++w+ Aco014104.1 176 KETWTEEEERMLVEAHKKFGNK-WAEIAKHVP-GRSENSIKNHWN 218 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 31.158 | 119 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-31 | 121 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 123 | 172 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 125 | 178 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.43E-16 | 127 | 170 | No hit | No description |
Pfam | PF13921 | 7.8E-19 | 127 | 187 | No hit | No description |
PROSITE profile | PS51294 | 22.594 | 175 | 225 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-18 | 175 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 179 | 223 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-9 | 185 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MERGFGFREL VEKRMRSLRP PPLLAPLERF LSSSSTGELC LSAVKGEETA VNYPSGPSVL 60 DHITSAIGVP PSGILLNESS FFGGLLVGNG EEAARRESNR GSKKAQSSSS SSSTTTVPAK 120 NVVKGQWTAE EDRLLVQLVD QHGVRRWSQI AKNLVGRIGK QCRERWHNHL RPDIKKETWT 180 EEEERMLVEA HKKFGNKWAE IAKHVPGRSE NSIKNHWNAT KRRQNAKRRS KRKTGSRGGK 240 PEPSILQDYI RSKTISNLKD NCTRRNDPPN LIPSNATYGV YGAMQQPMET NLNQSVNSES 300 VEFDAYHVGN MHDPCIHDSL DDAYYLWGLD DCMLMASPPS LDWVYHEEVK GEFYEMGSNQ 360 DKYTGEPHLL REEHASPGHV FAAEGDEFFF KDQTSSSSKG DMDLMEMISW QMSQSQSRSQ 420 SSSCNGSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-44 | 122 | 224 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-44 | 122 | 224 | 2 | 104 | C-Myb DNA-Binding Domain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 231 | KRRQNAKRRSKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923245.1 | 1e-111 | transcription factor MYB119-like | ||||
TrEMBL | A0A199UNH8 | 0.0 | A0A199UNH8_ANACO; Transcription factor MYB98 | ||||
STRING | XP_008785587.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-59 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Aco014104.1 |