PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013950.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 691aa    MW: 74529.4 Da    PI: 7.5421
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94e-23127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++++ 
  Aco013950.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysTDPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTENGD 220
                  89****************************996444444..8999*********************************************..458899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Aco013950.1 221 LCVGIRRA 228
                  9****997 PP
2Auxin_resp119.23.2e-39299382183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk+  v++a++v++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Aco013950.1 299 AANLAASGQPFEVVYYPRASTPEFCVKAGAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 382
                  7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-37120231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29122233IPR015300DNA-binding pseudobarrel domain
CDDcd100177.77E-21126227No hitNo description
SMARTSM010196.4E-21127229IPR003340B3 DNA binding domain
PfamPF023621.7E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83127229IPR003340B3 DNA binding domain
PfamPF065074.0E-34299382IPR010525Auxin response factor
PROSITE profilePS5174520.153604682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MITFTDSPKE AMKETEKCLD PQLWHACAGG MVQMPPIHSK VYYFPQGHAE HAQGGPADPL  60
GPSPSRVPPL ILARVSAIKF MADPETDEVF ARIRLVPVRP NEPDYGDHCE IGGNGDGPDA  120
QEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYST DPPVQTVLAK DVHGVVWKFR  180
HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFLRTENGD LCVGIRRAKR GVGAGPESPP  240
GWNTPNGNCV SAYGNFSVFL REEESKLMRG PANGGNMNGG GGGSLRGKGR VRAESVVEAA  300
NLAASGQPFE VVYYPRASTP EFCVKAGAVR AAMRVQWCPG MRFKMAFETE DSSRISWFMG  360
TISSVQVADP IRWPNSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLPPFSPPR  420
KKLCVPQHPG GFPLEAQLQG PAFHGSPFGP VSSPLCCFPD SAPAGIQGAR HAHLGLSISD  480
LHLSKLQSSL FAAAPPARIS TGLIVSNSPI RENISCLLTI GSPSQPTKKS VNGKTPQLVL  540
FGQPILTEQQ ISLSNSADTA SPGITKNSSS DGNPEKTVNV SDGSGSAVNQ NGHAENSSCE  600
ELVAGHCKVF MDSEDVGRTL DLSVLGSYEE LYRRLGDMFG IDRAELMSHV RYRDAAGAVK  660
HTGDEPFSEF MRSARRLTIV TDAGSDNLGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-692240322353Auxin response factor 1
4ldy_B2e-692240322353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084645.10.0auxin response factor 18-like isoform X1
RefseqXP_020084646.10.0auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A199W0520.0A0A199W052_ANACO; Auxin response factor
STRINGXP_008791554.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]