PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29717.8 Da PI: 6.5263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g+ R++k+c++rw +yl Aco013937.1 22 KGPWTPEEDRILVDYIQRYGHGNWRALPKQAGLLRCGKSCRLRWANYL 69 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 75 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e + +++++lG++ W++Ia++++ gRt++++k+ w++yl Aco013937.1 75 RGNFTKEEEEMIFKLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTYL 120 89********************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 13 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.861 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-31 | 18 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.10E-11 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 26.069 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-16 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 75 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.92E-11 | 77 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MLGNMLIKMV RAPCCEKMGV KKGPWTPEED RILVDYIQRY GHGNWRALPK QAGLLRCGKS 60 CRLRWANYLR PDIKRGNFTK EEEEMIFKLH ELLGNRWSAI AARLPGRTDN EIKNVWHTYL 120 KKRLMPNQTV KESKKRAIHT SEPKTESKPI IPRSDSGLAT SPEYSMSGFS SSVADGNSAA 180 TVEESFSSEE FTEIIDERFW SETLSMDDCF ATTMQYGASE TPSGDQINEP SLSPLSSNSE 240 GMEFWWRVFM EAGEMKDLAL I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 22 | 124 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083877.1 | 0.0 | myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 1e-84 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A199W081 | 0.0 | A0A199W081_ANACO; Myb-related protein Myb4 | ||||
STRING | XP_008791593.1 | 1e-102 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 4e-78 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Aco013937.1 |
Publications ? help Back to Top | |||
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