PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013825.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 853aa    MW: 91779.1 Da    PI: 6.0314
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013825.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.6e-21124179156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe+lF+++++p++++r eL+k+l L+ rqVk+WFqNrR+++k
  Aco013825.1 124 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLESRQVKFWFQNRRTQMK 179
                  688999***********************************************998 PP
2START189.61.5e-593365701206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela++a++elvk+a+ eep+W        e +n+de++++f++  +     + +ea r+ g+v+ +++ lve+l+d + +W  +++    + +t+e+i
  Aco013825.1 336 ELALAAMEELVKMAQMEEPLWIPTFdgtaETLNYDEYRSTFPRIIGprpsgYVSEATREMGMVIINSVALVETLMDAN-RWADMFPcmiaRTSTTEAI 432
                  5899******************9999999************99887********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...........-TTSEE-EESSEEEEEEEECTCEEEEEE CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..........sssvvRaellpSgiliepksnghskvtw 166
                  ssg      galqlm aelq+lsplvp R+  f+R+++q+ +g+w++vdvS+d  ++ ++          + +++ +++lpSg+++++++ng+skvtw
  Aco013825.1 433 SSGvggtrnGALQLMHAELQVLSPLVPvREMQFLRFCKQHAEGVWAVVDVSIDGLRDHNTsaaaaaaaaaNTPYMSCRRLPSGCVVQDMPNGYSKVTW 530
                  *****************************************************87777655666666666779************************* PP

                  EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  veh+++++  +h+l+r+l++sgla+ga++wvatlqrqc++
  Aco013825.1 531 VEHAEYDETGVHQLYRPLLSSGLAFGARRWVATLQRQCQC 570
                  **************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-20108179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-21116179IPR009057Homeodomain-like
PROSITE profilePS5007117.508121181IPR001356Homeobox domain
SMARTSM003891.4E-12122185IPR001356Homeobox domain
PfamPF000461.9E-18124179IPR001356Homeobox domain
CDDcd000869.70E-18124179No hitNo description
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084842.025327573IPR002913START domain
SuperFamilySSF559611.54E-31329570No hitNo description
CDDcd088751.61E-121331569No hitNo description
PfamPF018525.4E-51336570IPR002913START domain
SMARTSM002343.9E-44336570IPR002913START domain
SuperFamilySSF559619.62E-22600772No hitNo description
SuperFamilySSF559619.62E-22801841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MSFGGLFDGG GGGSSGAFPF GSATMPPGAV SQPRTLSPAI SKAGFSTSPA LSLGLQTNLD  60
VQGEMNRMGI MGVGGGSGGR AGSGDGDSMG RNKEDENESR SGGSDNLDGA SGDDLDGNEN  120
PRKKKRYHRH TPQQIQELES LFKECPHPDE KQRLELSKRL CLESRQVKFW FQNRRTQMKM  180
EWFYHEQTQI ERHENALLRQ ENDKLRAENL TIREAMRNPI CTNCGGPAML GEVSLEEQHL  240
RIENARLKDE LDRVSALAGK FLGRPISALA SPIPQMPNSS LELAVGTNGF AGLGSVAHTL  300
SAIPDFVPSA MVGPITPPPT AHRMLDGPFE RSVFLELALA AMEELVKMAQ MEEPLWIPTF  360
DGTAETLNYD EYRSTFPRII GPRPSGYVSE ATREMGMVII NSVALVETLM DANRWADMFP  420
CMIARTSTTE AISSGVGGTR NGALQLMHAE LQVLSPLVPV REMQFLRFCK QHAEGVWAVV  480
DVSIDGLRDH NTSAAAAAAA AANTPYMSCR RLPSGCVVQD MPNGYSKVTW VEHAEYDETG  540
VHQLYRPLLS SGLAFGARRW VATLQRQCQC LAILMSSSVP ARDHAAAITP GGRRSMLKLA  600
QRMTDSFCAG VCASAAQNWR RLDEWGCAGV GDEVRVLTRQ SVSDPGEPPG VVLSAATSVW  660
LPVPPHRLFD FLRDERLRSQ WDILSNGGPM QEMAHIAKGQ HHGNAVSLLR AGAVNSNQSS  720
MLILQETCTD ASGSLVVYAP VDVPAMHLVM NGGDSAYVAL LPSGFAILPD APRSNPNIPN  780
SNPPTSAAPS DANIDGSSVG GGSLVTVAFQ ILVNSLPTAK LTMESVETVN NLLTCTIQKI  840
KAALQNDNII SP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114857.10.0homeobox-leucine zipper protein ROC5-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A199W8320.0A0A199W832_ANACO; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]