PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24183.5 Da PI: 8.3242 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.6 | 7.3e-32 | 27 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aC+ lrr+C ++Cv+ap+fp +qp++fa+v++++G+ nv++ll++lp+e+r++a++sl+yeA +++rd v Ga+gv++ ++++l++l+ el ++ Aco013561.1 27 PCTACRQLRRGCRPGCVFAPCFPPSQPNRFAIVRRVYGVGNVQRLLEELPPERRPAATDSLAYEASMQLRDRVFGAAGVVSLYEHRLHSLQLELLCAR 124 7******************************************************************************************9998877 PP DUF260 99 ee 100 +e Aco013561.1 125 AE 126 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.525 | 26 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-30 | 27 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MANEAAANSA LAGGVAAAAG RPAIVHPCTA CRQLRRGCRP GCVFAPCFPP SQPNRFAIVR 60 RVYGVGNVQR LLEELPPERR PAATDSLAYE ASMQLRDRVF GAAGVVSLYE HRLHSLQLEL 120 LCARAELSTY ECSNRNDANR VPQITNQKFS KVCGGRGGGW GDGWYEAMRV EGCVSEAKIA 180 ERLAAATDAA VVSIRPVEDR IAATMTATAV AKSSNQIEDA ANNQII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 17 | 132 | 1 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 17 | 132 | 1 | 116 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020111049.1 | 1e-165 | LOB domain-containing protein 6-like | ||||
TrEMBL | A0A199VJA9 | 1e-123 | A0A199VJA9_ANACO; LOB domain-containing protein 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-28 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco013561.1 |