PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 232aa MW: 26027.3 Da PI: 6.7328 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.3e-15 | 31 | 71 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d++ +lG++ W++I ++++ gRt++++k++w+++ Aco013437.1 31 SDSEEKLVIDLHSRLGNR-WSKITSYLP-GRTDNEIKNHWNTH 71 788***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.217 | 1 | 21 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 8 | 20 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-20 | 8 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 21 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.287 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-13 | 31 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.22E-10 | 31 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MHGVGLLRCG KSCRLRWTNY LRPDIKRGLL SDSEEKLVID LHSRLGNRWS KITSYLPGRT 60 DNEIKNHWNT HIKKKLRKMG IDPLTHKPIV PSSGEGVHND HQQQPPVRVS ATDRKDESGD 120 QLDLAADVGE LVDGKAAHDF CTDEVPMMEP HEIIIPCGTA SAASSCSYST SSSSASVASS 180 NSILENNKAK EMKQQQQLQC MEWAESSMSF WDMDTDFTDW NLMHTHKYQT M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 8 | 76 | 40 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020103956.1 | 1e-163 | protein ODORANT1-like | ||||
TrEMBL | A0A199UGX6 | 1e-113 | A0A199UGX6_ANACO; Protein ODORANT1 | ||||
STRING | GSMUA_Achr10P29970_001 | 6e-69 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 7e-55 | myb domain protein 43 |
Link Out ? help Back to Top | |
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Phytozome | Aco013437.1 |