PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013357.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 197aa    MW: 21881 Da    PI: 10.6526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013357.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.22.5e-121091353056
                  HHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  30 reeLAkklgLterqVkvWFqNrRakek 56 
                   + LAk+l+L  rqV vWFqNrRa+ k
  Aco013357.1 109 EKALAKQLNLRPRQVEVWFQNRRARTK 135
                  578**********************98 PP
2HD-ZIP_I/II902.8e-291061702691
  HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   e  ++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr +l
  Aco013357.1 106 AEVEKALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELR-AL 170
                  556689********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-11106140IPR009057Homeodomain-like
PfamPF000461.1E-9109135IPR001356Homeobox domain
SuperFamilySSF466895.43E-10110145IPR009057Homeodomain-like
CDDcd000866.19E-7112138No hitNo description
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PROSITE profilePS5007111.936112137IPR001356Homeobox domain
SMARTSM003408.5E-23137180IPR003106Leucine zipper, homeobox-associated
PfamPF021837.8E-11137171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MCVIRARRRL ADARASTRHR REKNPRNRVV DVDVDRKPCS VGASLTLSYP TNAYGGGPRH  60
RRAPRVSSPH STVSSFSAAY PPQGGVKRER VDASAAAAAL APTEEAEVEK ALAKQLNLRP  120
RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ETLTDENRRL QKELQELRAL KFAAAAAPGP  180
LPPPQFYMQF PDSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6654181e-124KM665418.1 Ananas bracteatus clone 50555b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104103.11e-102homeobox-leucine zipper protein HOX19-like
TrEMBLA0A199UZ111e-45A0A199UZ11_ANACO; Homeobox-leucine zipper protein HOX19
STRINGXP_008790281.17e-46(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-36HD-ZIP family protein