PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013260.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 430aa    MW: 46305.7 Da    PI: 6.8574
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.61.5e-608940929374
         GRAS  29 elaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQW 125
                  +l s + ++  R+a +f  AL + l+        al+p + +    +  l a+k+f +vsP++ fs lta qa+l+ ++g+ + vH++Dfd++ G+ W
  Aco013260.1  89 HLPSAALRAALRAALHFSGALLRLLLP------PALSPPSLN---PVLDLGARKAFADVSPVPHFSDLTAVQALLDRLSGAaDPVHVVDFDVGVGARW 177
                  456666688899999999999999999......444444444...688899*****************************9999************** PP

         GRAS 126 paLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsl 220
                  paL+++L+  +e+pps   T+++           +  ++La+fA+e+ vpfefn++   +l++++++ Lr  +   +E++ Vnl +     l    ++
  Aco013260.1 178 PALIRELSLLSESPPSSPPTTCSI----------SGLDNLAQFAAECCVPFEFNAV---ALDAFDPQVLRSVSgqfDESVFVNLPIGHTANL----PI 258
                  ***************988888888..........34589****************8...78888888887777777*********9544443....45 PP

         GRAS 221 eserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                      +++L l+k+l+Pk+v+ v++ +  +++   sF+++++++l+  +al++s++a  +   + + ++Er +l ++i+n+v   +++     e++++W
  Aco013260.1 259 ----QSLLPLIKQLNPKLVISVNHLCGGGGGgefSFARHVFNSLQSATALLESIDAA-GMSPDIADMIERLILLPRIENAVLGFHDR--SPAEKKMTW 349
                  ....55******************988844445699******************777.556688999**************977776..889999*** PP

         GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk.drpLvsvSaWr 374
                  r  + +aG+ pv+ls+ a++qa++llr+++ +g++ve+++++lvl+W+ +r+LvsvSaWr
  Aco013260.1 350 RTLFASAGLVPVQLSNLAEAQAECLLRRHPIRGFHVEQREAALVLCWQhGRELVSVSAWR 409
                  ***********************************************7469********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.49336388IPR005202Transcription factor GRAS
PfamPF035145.2E-5889409IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MFYNNYSSSN NTNTNTNTNN SDVSDPESSI LLMNVISSSS SSSSSRIYTD PPTDSTSAVA  60
GLRTHLRPRP PPRLLPSSSS SHHHHHHHHL PSAALRAALR AALHFSGALL RLLLPPALSP  120
PSLNPVLDLG ARKAFADVSP VPHFSDLTAV QALLDRLSGA ADPVHVVDFD VGVGARWPAL  180
IRELSLLSES PPSSPPTTCS ISGLDNLAQF AAECCVPFEF NAVALDAFDP QVLRSVSGQF  240
DESVFVNLPI GHTANLPIQS LLPLIKQLNP KLVISVNHLC GGGGGGEFSF ARHVFNSLQS  300
ATALLESIDA AGMSPDIADM IERLILLPRI ENAVLGFHDR SPAEKKMTWR TLFASAGLVP  360
VQLSNLAEAQ AECLLRRHPI RGFHVEQREA ALVLCWQHGR ELVSVSAWRV DDPGKRSVTI  420
MFHILQLVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-2110040942375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114584.11e-152scarecrow-like protein 15, partial
TrEMBLA0A199VTH91e-179A0A199VTH9_ANACO; Scarecrow-like protein 27
STRINGXP_008796953.11e-83(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.13e-48GRAS family protein