PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LSD | ||||||||
Protein Properties | Length: 139aa MW: 14368.8 Da PI: 7.7401 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.2 | 5.5e-13 | 22 | 46 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C +V Aco013206.1 22 CSGCRNLLLYPIGATSVCCAVCSAV 46 **********************998 PP | |||||||
2 | zf-LSD1 | 46.9 | 4.5e-15 | 61 | 85 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Aco013206.1 61 CGGCHTLLMYIRGATSVQCSCCHTV 85 ************************9 PP | |||||||
3 | zf-LSD1 | 40.8 | 3.7e-13 | 99 | 123 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C++V Aco013206.1 99 CGNCHMLLMYQYGARSVKCAVCNFV 123 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 7.1E-5 | 19 | 121 | No hit | No description |
TIGRFAMs | TIGR01053 | 6.4E-12 | 19 | 49 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-10 | 22 | 46 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 5.12E-6 | 36 | 105 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 8.0E-15 | 58 | 87 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 61 | 85 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.7E-10 | 96 | 126 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-12 | 99 | 123 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MPVPLAPYPF TPPNGAQNQL VCSGCRNLLL YPIGATSVCC AVCSAVTAVP PPGTEMAQLV 60 CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCHMLLMYQY GARSVKCAVC 120 NFVTSVGASP SAEQKLST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114485.1 | 3e-95 | protein LSD1 | ||||
Swissprot | Q0J7V9 | 1e-78 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A199UL24 | 8e-86 | A0A199UL24_ANACO; Protein LSD1 (Fragment) | ||||
STRING | ERN09291 | 2e-85 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-61 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco013206.1 |
Publications ? help Back to Top | |||
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