PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013198.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 268aa    MW: 29612.7 Da    PI: 9.2974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013198.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llv+++++ G g+W+  ++  g++R++k+c++rw +yl
      Aco013198.1 14 KGPWTPEEDKLLVEYIQKNGHGSWRHLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.85.3e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+ +eE++l+++++ +lG++ W++Ia++++ gRt++++k++w+++l
      Aco013198.1  67 RGRFAEEEEKLIIHLHSLLGNK-WSSIAARLP-GRTDNEIKNHWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-24563IPR009057Homeodomain-like
PROSITE profilePS5129417.907961IPR017930Myb domain
SuperFamilySSF466891.06E-3111108IPR009057Homeodomain-like
SMARTSM007174.7E-151363IPR001005SANT/Myb domain
PfamPF002492.2E-171461IPR001005SANT/Myb domain
CDDcd001674.44E-121661No hitNo description
PROSITE profilePS5129428.22862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2664116IPR009057Homeodomain-like
SMARTSM007174.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1667112IPR001005SANT/Myb domain
CDDcd001671.39E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRAPCCDEI GVKKGPWTPE EDKLLVEYIQ KNGHGSWRHL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF AEEEEKLIIH LHSLLGNKWS SIAARLPGRT DNEIKNHWNT HLRKKLLHMG  120
IDPVTHKPRT DLNLFTSSLN LIKLQADATH LAKLQLAQGL LQVLTTTATT TSNSNPNMDL  180
VGLMGLLSSL RNYEGFVNSN NSSPHGIQGS HSSLSSLPNM GFENQIGEFQ APIDHGPSPH  240
ELRRAPEFAI LDAVRCLGGT QSGGSEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-301411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114671.10.0transcription factor MYB34-like isoform X1
RefseqXP_020114672.10.0protein ODORANT1-like isoform X2
RefseqXP_020114673.10.0protein ODORANT1-like isoform X2
SwissprotQ9S9Z25e-80MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A199UGU91e-180A0A199UGU9_ANACO; Transcription factor MYB39
STRINGXP_008778716.15e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-80myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]