PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013172.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRF

Protein Properties

Length: 400aa MW: 43858.7 Da PI: 8.9141

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013172.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.9	4.8e-25	109	153	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++g+k+CErH+hrgr+rsrk++e+ Aco013172.1 109 DPEPGRCRRTDGKKWRCSKDAYPGSKYCERHMHRGRNRSRKPVES 153 79****************************************986 PP
2	QLQ	60.6	4.5e-21	21	56	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+ +L++Q+l++KyL+a++PvPp+Ll++i++ Aco013172.1 21 PFTASQWVELEHQALIFKYLMAGVPVPPDLLVPIRR 56 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.9E-12	20	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.5E-15	21	55	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.845	21	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.046	109	153	IPR014977	WRC domain
Pfam	PF08879	3.2E-21	110	152	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSSAAAAAAE VEAAAGGWRA PFTASQWVEL EHQALIFKYL MAGVPVPPDL LVPIRRSFDA 60 LPARYYHPHH HYHHAAHIYI PVSDLIYTKV SFGDSHVVDY YSYYGKKLDP EPGRCRRTDG 120 KKWRCSKDAY PGSKYCERHM HRGRNRSRKP VESQTTASSQ SQSASSSTVT GGDGAGGSSG 180 GSFRTSPLPS LTASNSPQVS YLGRASSSRL QMDSTPYGIK YISGAKTEVG EHSFFSEASG 240 STRGLRMDSS VNNSWRLMPS SHDASSFPLM ETRENSILDS TSSPLHHPMH INSLSLQQQQ 300 QYSFLGSGFS SANPVVKPEN QPLRPFFDEW PRTKDSWSDI EDERSNRTSL STTQLSISIP 360 MVSSAFSTTS SRSPNGLFSV AAKYLLSEVS FSISLIHEP*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSSAAAAAAE VEAAAGGWRA PFTASQWVEL EHQALIFKYL MAGVPVPPDL LVPIRRSFDA  60
LPARYYHPHH HYHHAAHIYI PVSDLIYTKV SFGDSHVVDY YSYYGKKLDP EPGRCRRTDG  120
KKWRCSKDAY PGSKYCERHM HRGRNRSRKP VESQTTASSQ SQSASSSTVT GGDGAGGSSG  180
GSFRTSPLPS LTASNSPQVS YLGRASSSRL QMDSTPYGIK YISGAKTEVG EHSFFSEASG  240
STRGLRMDSS VNNSWRLMPS SHDASSFPLM ETRENSILDS TSSPLHHPMH INSLSLQQQQ  300
QYSFLGSGFS SANPVVKPEN QPLRPFFDEW PRTKDSWSDI EDERSNRTSL STTQLSISIP  360
MVSSAFSTTS SRSPNGLFSV AAKYLLSEVS FSISLIHEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054834	6e-42	BT054834.1 Zea mays full-length cDNA clone ZM_BFb0084L18 mRNA, complete cds.
GenBank	BT066926	6e-42	BT066926.1 Zea mays full-length cDNA clone ZM_BFb0106E18 mRNA, complete cds.
GenBank	EF515851	6e-42	EF515851.1 Zea mays putative growth-regulating factor 12 (GRF12) mRNA, complete cds.
GenBank	EU974389	6e-42	EU974389.1 Zea mays clone 447954 growth-regulating factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114550.1	0.0	growth-regulating factor 5-like isoform X1
Swissprot	Q6AWY4	1e-100	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A199V1G4	0.0	A0A199V1G4_ANACO; Growth-regulating factor 5
STRING	XP_008812758.1	1e-131	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11046	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-40	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Aco013172.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]