PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013092.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 476aa    MW: 53103.5 Da    PI: 6.2454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013092.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13198241755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +ErrRR+++N+++  Lr+l+Pk      +K++ a+iL  A+eYI +Lq
  Aco013092.1 198 VAERRRRKKLNDRLYSLRSLVPKI-----TKMDRASILGDAIEYIMELQ 241
                  68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-14189245No hitNo description
PROSITE profilePS5088816.056191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18194257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17198256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11198241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGGGEMITEA LRPLVGSNGW DFCITWKLSP DQRYLVWMSC CCSGVVTQSS SAAEIFPLLS  60
TQKFSCRDNV YQHARTGACD ALEELPLSIP LDSSLGYLKH IIYTNMVLSK SFVMGEDQQA  120
VEFVMSQCTM DIGGADDGVQ SWTEPPEPMA ADGSTAFPWD MPHPVDQARL FGPSLGLFSG  180
PMYRTKSGGK RHHSKNLVAE RRRRKKLNDR LYSLRSLVPK ITKMDRASIL GDAIEYIMEL  240
QKQVKELQDE LEENHNQDDE AAKGSNNNSN GHNMGVSVHN ELMNHHNHGL LMENEGSPNC  300
SLMVIDNNNN NNNNNNNNDA TGKQGHDATC KEEKGHEMEP QVEVKQVEGN EFFLKVLCEQ  360
KQGGFARLME AMTSLGLEVT NANVTAYKPL VLNVFRVAID HLGNIFLQKR DNGAVQAEQV  420
RDSLLEVTRD STGGWMEAGQ AKSTADNGGM DYHHHRHHHF HHQLNSHHNI HYLNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14189260273Transcription factor MYC2
5gnj_B3e-14189260273Transcription factor MYC2
5gnj_E3e-14189260273Transcription factor MYC2
5gnj_F3e-14189260273Transcription factor MYC2
5gnj_G3e-14189260273Transcription factor MYC2
5gnj_I3e-14189260273Transcription factor MYC2
5gnj_M3e-14189260273Transcription factor MYC2
5gnj_N3e-14189260273Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199206ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080007.10.0transcription factor ABORTED MICROSPORES-like
TrEMBLA0A199VMR51e-169A0A199VMR5_ANACO; Transcription factor ABORTED MICROSPORES
STRINGXP_008811619.13e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.16e-63bHLH family protein