PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013073.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 323aa    MW: 35460.5 Da    PI: 4.7577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013073.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.9e-11156198754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Aco013073.1 156 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 198
                  79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.996149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15153217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-5156203No hitNo description
PfamPF000103.6E-9156198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00227248276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MELDENGFLE ELLSMSMRRE STWDAFSAAA AAAAGIGEFF AAGEGGFDCF MHESQPCAAV  60
LPGFAAAFDA GCSDRSHDVH RATTTEPNFD CLSEVWFPAP PLPPPPAEGA LDVGLVHGGE  120
SSVCKVEMGD PMAFGTAVGG ERKKKKADGV PSKNLMAERR RRKRLNDRLS MLRSVVPKIS  180
KMDRTSILGD TIDYMKELLE RIKHLQEEME VGSEKAKLVS LFKDQLNPNE ILVRNSPKFD  240
VERRESDTRI EIYCAMKPGL LLQMVDTLDA LGLEIQQCVV SCFNEFGMQA SCSEDMEQRA  300
LMTSEEVKQA LFKNAGYGGR CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143163KKKADGVPSKNLMAERRRRKR
2157164ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6613311e-114KM661331.1 Ananas bracteatus clone 43142b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020115118.10.0transcription factor bHLH93-like
SwissprotQ9LSL14e-77BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A199VKZ80.0A0A199VKZ8_ANACO; Transcription factor bHLH93
STRINGXP_008806159.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-79beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]