PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012997.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 428aa    MW: 46464.2 Da    PI: 11.2991
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012997.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-141381892576
     trihelix  25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                  ++++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++ ++ +s
  Aco012997.1 138 RSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRASASAS 189
                  5789****************************************99765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-9140184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAYNQIPTLS ILYFLPILCP VPQCPKNHVL RALGLLSLSS PPPPPPPPPP PTTTHHRKPT  60
STSTSTPPRR RRAANLASSP PRPLSSPATT ARKLTLTRRS SSSPAKRLDD ERRAGERRPP  120
GGRPLVGGGG AAAAGAPRSA EQRWKWVENY CWNHGCLRSQ NQCNDKWDNL LRDYKKVRDY  180
ESRASASASA SASAAASSSS SAPAPASAAS YWAMERHERK ERNLPTNLAA EVFDALTDVL  240
ARRAARRGGA GASAAAPLSS RAPPPQLPPP ADPPPPPPPP PPPPPPPPPL PQASVSVEAS  300
ESSWESESES ESESSTEGES GGEADEPERK RQRRRRRRRR RQVMKRVGSS VVRSATVLAR  360
TLVACEEKRE RRHQELVALE ERRLRFQEQR ADTRRQGFAA LVSAVNNLSA AIHALVSDHR  420
CPDSSRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128GGRPLVGGG
2328334RKRQRRR
3328341RKRQRRRRRRRRRQ
4330337RQRRRRRR
5330340RQRRRRRRRRR
6331337QRRRRRR
7332340RRRRRRRRR
8333340RRRRRRRR
9334340RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813702.12e-82atherin-like
TrEMBLA0A2H3ZHQ74e-81A0A2H3ZHQ7_PHODC; atherin-like
STRINGXP_008813702.17e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-29Trihelix family protein