PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012988.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 779aa    MW: 87123.7 Da    PI: 6.4497
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012988.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Aco012988.1 126 FCKTLTASDTSTHGGFSVPRRAAERVfppldfsQQPPA--QELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLAAGDSVLFI--WNEKNQ 219
                  99***********************9*****8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco012988.1 220 LLLGIRRA 227
                  9****997 PP
2Auxin_resp118.26.7e-39252335183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka+  +++svGmRf+m fete+ss rr++Gt++ +sd+dp+rWpnS+Wrs+k
  Aco012988.1 252 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEISDMDPIRWPNSHWRSVK 335
                  79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-47111255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-20125226No hitNo description
PfamPF023623.8E-21126227IPR003340B3 DNA binding domain
SMARTSM010193.1E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337126228IPR003340B3 DNA binding domain
PfamPF065079.4E-34252335IPR010525Auxin response factor
SuperFamilySSF542773.07E-6702778No hitNo description
PROSITE profilePS5174524.737710778IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MSTSVGTLDP RPGEEKKCLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE QVAASTNKEV  60
EGHIPNYPNL PPQLICQLHD VTMHADVETD EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFSQQ PPAQELIARD IHDIEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLAAGDSV LFIWNEKNQL LLGIRRASRP QTIMPSSVLS  240
SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLS KYVKAVFHTR ISVGMRFRML  300
FETEESSVRR YMGTITEISD MDPIRWPNSH WRSVKVGWDE STAGERPPRV SLWEIEPLTT  360
FPMYPSLFPL RLKHPWYPGV PGLHGDDSNA LMWLRGVAGE GNYQSLNFQS PGMGSWGPQR  420
VQSTLLGNDH DQYQMMAAAT LSNGTSMKQQ FLHIRQPLQS SQEPSNINLL MQQQILQQAS  480
QQQLISPQSQ HVFHQQLQQL QQQQHQQHQQ QQHQQPLNNQ KQKIQQTQNY QVPSSPVFQK  540
QSQLPSHLCQ KFGLSDPNMN FSTILNSNSA QNMLDSSFLE GSSNMIDLTR ISQPMMSEHQ  600
QLQWEPKPMA SHSSSFGGSG LLPSLVGKDG SAGNENDGHG DVANHTLFGA NIDSSSLLYN  660
VVPNLTSNAG DNDVSTIPYG SSSLQNPLYG CLNESSGLLQ NSGENDSTNR TFVKVYKSGS  720
VGRSLDITRF NNYDELREEL GQMFGIQGQL EDPHRSGWQL VFVDRENDIL LLGDDPWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-163835640388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079642.10.0auxin response factor 12-like isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A199VLF80.0A0A199VLF8_ANACO; Auxin response factor
STRINGLPERR04G24670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6