PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012950.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 362aa    MW: 39533.7 Da    PI: 6.5807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++++G g+W++ +   g++R++k+c++rw +yl
      Aco012950.1 14 KGPWTAEEDKKLVEYIEKHGHGNWRSLPTSAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.93.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+ l+++++  lG++ W++Ia+++  gRt++++k++w+++l
      Aco012950.1  67 RGKFSEDEERLIIHLHSILGNK-WSAIASRLS-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-25864IPR009057Homeodomain-like
PROSITE profilePS5129418.623961IPR017930Myb domain
SuperFamilySSF466895.87E-3211108IPR009057Homeodomain-like
SMARTSM007177.3E-161363IPR001005SANT/Myb domain
PfamPF002491.3E-171461IPR001005SANT/Myb domain
CDDcd001675.50E-131661No hitNo description
PROSITE profilePS5129426.51962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007174.4E-1666114IPR001005SANT/Myb domain
PfamPF002494.3E-1567112IPR001005SANT/Myb domain
CDDcd001673.36E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRAPRGDEQ GVKKGPWTAE EDKKLVEYIE KHGHGNWRSL PTSAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEERLIIH LHSILGNKWS AIASRLSGRT DNEIKNYWNT HLRKKLLRMG  120
IDPVTHQRRT DLDLLTISFS NLLAAALNLG NLTTPLDITA LGLRADAANF ARLQILQNLT  180
INSTAAATTP TLGAMNSTIL GSSSLHSSQF SDLLGLNREI EGLVNGALGL HEDQIVSNLG  240
FSCSNISNIL SSLEYCGVTH IAEQEKMPNM INTSCMDSGT VNGNINGGNS NMPVFTSSCS  300
IPTMHSTPPF VSASPDQDSA TKFQVQEPMI DSNASTPCEA WEVPNVLAEL DIDLGWKHVL  360
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085133.10.0myb-related protein 330-like
SwissprotQ9S9Z29e-79MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A199UZW01e-145A0A199UZW0_ANACO; Transcription factor MYB39
STRINGXP_008796312.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-77myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]