PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 33147.7 Da PI: 6.7223 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 2e-12 | 86 | 137 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l P + + +K + a+i+ A++++k+L+ Aco012937.1 86 QRMTHIAVERNRRRLMNEHLAVLRSLTPDS---YVQKGDQASIVGGAIDFVKELE 137 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.78E-14 | 84 | 141 | No hit | No description |
PROSITE profile | PS50888 | 14.907 | 85 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 85 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 86 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 86 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 91 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MTLEALPSNE LPAFLIYDTI NAAAAAAAAS SSRLLFNGNG GITEESPLIG GMAAMAEEVA 60 VAAGEGRRKR RRRARSGKSK DDAESQRMTH IAVERNRRRL MNEHLAVLRS LTPDSYVQKG 120 DQASIVGGAI DFVKELEQLL QSLEAQKRTL LQQQQQQQQK GNSDIFPTAC YENDSPPFAQ 180 FFSYPQYAWC HPARDYPSLE IQHRPATVAP SVADIEVSLI ETHANIRILT ARQPGQLLKM 240 VAGIQSLRLT ILHLNVTVLD AIVLYSLSVK VEEGCDVASV DDIAAAVHHI LSLIKAGTNL 300 VDR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 72 | RRKRRRR |
2 | 67 | 71 | RKRRR |
3 | 67 | 74 | RKRRRRAR |
4 | 86 | 97 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662981 | 3e-40 | AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence. | |||
GenBank | AP014960 | 3e-40 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 3e-40 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855235 | 3e-40 | CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080503.1 | 0.0 | transcription factor bHLH96-like isoform X2 | ||||
Refseq | XP_020084784.1 | 0.0 | transcription factor bHLH96-like isoform X2 | ||||
Swissprot | Q9C7T4 | 7e-65 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A2H3ZMK2 | 1e-114 | A0A2H3ZMK2_PHODC; transcription factor bHLH71-like | ||||
STRING | XP_008796282.1 | 1e-110 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 9e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco012937.1 |
Publications ? help Back to Top | |||
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