PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012875.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GATA

Protein Properties

Length: 499aa MW: 54293.6 Da PI: 7.5924

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012875.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.4	1.3e-15	26	60	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg t+TplWR+gp ++ LCnaCG ++r kg+ Aco012875.1 26 CRHCGITSTPLWRNGPPDKPVLCNACGSRWRTKGS 60 **************55555*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.66E-11	20	63	No hit	No description
SMART	SM00401	4.8E-9	20	72	IPR000679	Zinc finger, GATA-type
CDD	cd00202	7.78E-15	25	72	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.0E-12	26	60	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.2	26	59	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.3E-13	26	60	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MFFLSENFGR GKERKGNKEM GKQGPCRHCG ITSTPLWRNG PPDKPVLCNA CGSRWRTKGS 60 LANYTPLHAR EGIIDSEELK LTKVKSVSLK PKEPKLPKKK QSYSVVGNER EMPFSDQNFQ 120 KKIVEGDTSN RSSSGSAISC SESCAQFRMV DASDLAGSAQ SNVWDSIVPS KKRTYVTRAK 180 PAIEKLTKDL YSIMHQQPSS AFSVSSEEDL LYSSESPMGS FEMGYGSVLI KHLSSKSPEE 240 ESEASSFPVD NRSTAGEISM RPPSYNVHNN NDGEEIKGTS ISDAAADGKY KKCTEKAAQD 300 DAERHKLQNE KTAILGDPYS PLTSIVLEEK NCAGTGGKNV LSAPKFSASS NLATHKRPRD 360 CENQACSEIK CSTRSPKRSH QSGSTNLPSD CSSDPNCIVA ASKLIDDAAD FLESHGACFS 420 PRSIFSSPLS DRSSILVDDL LVDFPSNTSY PEAQLLYPSL EKKPVSESSQ PETGVTNREG 480 SDSIDRSSSF RSMLSRLL*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MFFLSENFGR GKERKGNKEM GKQGPCRHCG ITSTPLWRNG PPDKPVLCNA CGSRWRTKGS  60
LANYTPLHAR EGIIDSEELK LTKVKSVSLK PKEPKLPKKK QSYSVVGNER EMPFSDQNFQ  120
KKIVEGDTSN RSSSGSAISC SESCAQFRMV DASDLAGSAQ SNVWDSIVPS KKRTYVTRAK  180
PAIEKLTKDL YSIMHQQPSS AFSVSSEEDL LYSSESPMGS FEMGYGSVLI KHLSSKSPEE  240
ESEASSFPVD NRSTAGEISM RPPSYNVHNN NDGEEIKGTS ISDAAADGKY KKCTEKAAQD  300
DAERHKLQNE KTAILGDPYS PLTSIVLEEK NCAGTGGKNV LSAPKFSASS NLATHKRPRD  360
CENQACSEIK CSTRSPKRSH QSGSTNLPSD CSSDPNCIVA ASKLIDDAAD FLESHGACFS  420
PRSIFSSPLS DRSSILVDDL LVDFPSNTSY PEAQLLYPSL EKKPVSESSQ PETGVTNREG  480
SDSIDRSSSF RSMLSRLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020084395.1	0.0	GATA transcription factor 26-like isoform X1
TrEMBL	A0A199VNK9	1e-112	A0A199VNK9_ANACO; GATA transcription factor 26
STRING	XP_008786183.1	1e-109	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4424	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-51	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Aco012875.1