PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012846.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 313aa    MW: 34282.8 Da    PI: 8.7645
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012846.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-18144198256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q  +Lee F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Aco012846.1 144 RKKLRLSKDQSAILEETFKAHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 198
                  788899***********************************************98 PP
2HD-ZIP_I/II126.71e-40144233191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEe+F+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Aco012846.1 144 RKKLRLSKDQSAILEETFKAHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQKEVQELR-AL 233
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.8E-272109IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.605.3E-18123198IPR009057Homeodomain-like
SuperFamilySSF466891.5E-18133201IPR009057Homeodomain-like
PROSITE profilePS5007117.07140200IPR001356Homeobox domain
SMARTSM003898.7E-16142204IPR001356Homeobox domain
PfamPF000468.5E-16144198IPR001356Homeobox domain
CDDcd000864.37E-14144201No hitNo description
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
PfamPF021831.7E-11200234IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.4E-27200243IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMVEKEDLGL SLSLSSRAAA AAVDRVPLKL NLASSSSASP STLPFLLKPQ WSDLMASSSE  60
RRSAEMPLLR GIDVNRAPAA ERESEEEAGA SSPNSTLSSL SGGKRGERER EREPATSGGG  120
EEHDMERASS RGISDEEDGG DGSRKKLRLS KDQSAILEET FKAHNTLNPK QKLALAKQLN  180
LRPRQVEVWF QNRRARTKLK QTEVDCEFLK RCCESLTEEN RRLQKEVQEL RALKLSPQFY  240
MHATPPTTLT MCPSCERVSN SASAAPAVPP PPPSDQPQHL LHLRRPVPIA PAAPWAPVAL  300
RPSFLDAPPQ RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148SRKKLRL
2192200RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085639.10.0homeobox-leucine zipper protein HAT4-like
SwissprotP466014e-96HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A199W1730.0A0A199W173_ANACO; Homeobox-leucine zipper protein HAT2
STRINGXP_008803829.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-56homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]