PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012816.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 457aa    MW: 48208.4 Da    PI: 8.2978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012816.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16273319455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRdriN+++++L++l+P++      K +Ka++L +++eY+k+Lq
  Aco012816.1 273 VHNQSERKRRDRINQRMNTLQKLVPNS-----SKTDKASMLDEVIEYVKQLQ 319
                  6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.688269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-20272346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-14273319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18273329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-16274323No hitNo description
SMARTSM003539.5E-18275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSQCVPRWEL DVDPPPPPPP LLNSPPTTTP PQQLPPLVPT AGTSERYEVA EITWENGHLS  60
LQGHGLPRVA KPLPKFPTSA ASPWNKHHHH GGGGGHGTLE AVVDQATRPQ LQEVGPSVDL  120
LAWISGSHPS PSAAAAADLL VPCGEAVAGG RKRGRGSAAT ASQGSAAPGR GESALAAFDT  180
SSGGAGGDEV CFTPTTTSPT TTTTNTNNNT SASLGSPGTE NTSFGRGGGC YDSVCHSRRP  240
PQKDGVCNEE EKAAKREAGR SSSSAKKSRA AAVHNQSERK RRDRINQRMN TLQKLVPNSS  300
KTDKASMLDE VIEYVKQLQA QAQMMNRMSG MLMPMTMPLP LQMSMIGNMA NMAQMAQMGM  360
GMGMMDLSSL GRTGPMGLPS LPPLLHPSPF LPIMSPSWDG SGDRLQQPSG PIVSPDPFSA  420
FLACQTAQPM SMDAYNRMAA LYQQLYQQNT QSNSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155GRKRGRG
2277282ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6635251e-169KM663525.1 Ananas bracteatus clone 47980a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084714.10.0transcription factor UNE10
TrEMBLA0A199UTQ20.0A0A199UTQ2_ANACO; Transcription factor UNE10
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-47bHLH family protein