PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8754.55 Da PI: 4.8488 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.5e-11 | 3 | 50 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+e +l+ da ++ g +W +Iar +g g+t++++ ++ ++ Aco012769.1 3 SWTKEQNKLFEDALDRYDEGtpnRWQKIARAVGGGKTAEEVERHYEML 50 7********************************************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.7E-7 | 1 | 53 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.711 | 1 | 55 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.0E-12 | 2 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-6 | 2 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-6 | 3 | 51 | No hit | No description |
Pfam | PF00249 | 1.9E-8 | 3 | 50 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MSSWTKEQNK LFEDALDRYD EGTPNRWQKI ARAVGGGKTA EEVERHYEML IKDLKSIESE 60 NDNSSSNAKG DNTAYKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 3 | 59 | 10 | 65 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582408.1 | 3e-24 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 2e-20 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A199UH72 | 2e-41 | A0A199UH72_ANACO; Protein RADIALIS-like 3 | ||||
STRING | GSMUA_Achr2P22930_001 | 2e-23 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-20 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco012769.1 |