PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012759.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 272aa MW: 29697.5 Da PI: 8.4923

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012759.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	73	130	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ Aco012759.1 73 VPLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRH 130 5789***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	68	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-33	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MATPSMHICM DSSSDWLKGL FPEETLTPSS SAAAAAASAD LLLTYPTIPI HSQPLSVPLH 60 ERRARQGPPH EQVPLKCPRC DSTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGSLRNVPV 120 GGGCRKNKRH PPPPHSADKK PSNHHPHHAA AAAATSFGLH LSFSPPLPTT ITTCHNLNFF 180 NHKYNSLLDS QFYTYGNNNS SSSGNRILME DPGNTIAETK PTTAETRDLP LLEWQEQCCA 240 DIVGREAPCA GLGLWAAAGM IGGGHHGRSP AL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF542507	9e-77	AF542507.1 Oryza sativa Dof-like protein 34 mRNA, partial cds.
GenBank	CP012610	9e-77	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020088039.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A199UHQ2	0.0	A0A199UHQ2_ANACO; Dof zinc finger protein DOF5.3
STRING	XP_008795919.1	1e-55	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	2e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco012759.1