PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012607.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 315aa    MW: 34323 Da    PI: 8.9004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012607.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.2e-161055147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l ++v q+G+ +W++Ia+ ++ gR++k+c++rw++ 
      Aco012607.1 10 RGHWRPVEDAKLRELVSQFGPQNWNLIAENLQ-GRSGKSCRLRWFNQ 55
                     899*****************************.***********996 PP

2Myb_DNA-binding52.51.2e-1663105246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++ E+e+l+ a+k++G++ W++Ia+ ++ gRt++ +k++w+ 
      Aco012607.1  63 RAFSEAEEERLLTAHKLYGNK-WALIAKLFP-GRTDNAVKNHWHV 105
                      689******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.893156IPR017930Myb domain
SMARTSM007171.5E-13958IPR001005SANT/Myb domain
SuperFamilySSF466899.73E-2810103IPR009057Homeodomain-like
PfamPF002497.7E-161055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-251163IPR009057Homeodomain-like
CDDcd001676.85E-131354No hitNo description
PROSITE profilePS5129425.74957111IPR017930Myb domain
SMARTSM007178.6E-1561109IPR001005SANT/Myb domain
PfamPF002491.6E-1463104IPR001005SANT/Myb domain
CDDcd001675.61E-1264104No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2064109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
ENTHVKLCCR GHWRPVEDAK LRELVSQFGP QNWNLIAENL QGRSGKSCRL RWFNQLDPRI  60
NKRAFSEAEE ERLLTAHKLY GNKWALIAKL FPGRTDNAVK NHWHVIMARR HRELSTGGKR  120
RKMIIINNNN NNNNNNNNNN NNITNINNNN NNNAHKGGGV EQRSSGMSSA CACKGESTTT  180
AAREESGSGS TCTGFPLDSF AAVSGAVHGF FFNGFNLSHH PQLFGFFAGP DEKLVAVRKG  240
SSEFPRNCFQ GSASAMVAFE YSGHLDAAAA ASEASATESA SLYSNNSSLQ DEAAVGNGEK  300
VSLPFFDFLG VGAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3281105107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102066.10.0uncharacterized protein LOC109719693
SwissprotQ5NBM81e-69CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A199W9600.0A0A199W960_ANACO; Transcription factor MYB44
STRINGXP_008793340.15e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-66myb domain protein 117
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]